Factsheet for Solyc09g072930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009709	Potato	cytosol	70.73	72.22
PGSC0003DMT400009785	Potato	cytosol	69.69	70.98
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	57.51	67.68
Solyc02g033040.2.1	Tomato	nucleus	38.08	43.24
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	41.19	41.73
Solyc09g091710.1.1	Tomato	nucleus	43.26	41.54
Solyc10g052710.1.1	Tomato	cytosol	40.67	41.1
Solyc05g007530.1.1	Tomato	cytosol	36.53	37.9
Solyc10g068340.1.1	Tomato	cytosol	24.87	36.92
Solyc10g075010.1.1	Tomato	extracellular	33.42	36.34
Solyc05g007400.1.1	Tomato	cytosol	35.49	36.05
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	36.27	34.57
Solyc05g007360.1.1	Tomato	extracellular	33.16	31.92
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	32.12	31.88
Solyc09g072910.1.1	Tomato	plasma membrane	35.49	31.35
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	32.64	31.19
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	34.46	30.72
VIT_18s0041g01100.t01	Wine grape	cytosol	19.17	30.45
KRH11340	Soybean	cytosol, peroxisome, plastid	29.53	29.77
Solyc01g067030.2.1	Tomato	extracellular	27.98	29.27
KRH11341	Soybean	cytosol, plastid	29.53	29.01
KRH35044	Soybean	cytosol, extracellular, golgi	26.94	28.97
Solyc09g091690.1.1	Tomato	cytosol	29.02	28.87
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	27.72	28.84
Solyc10g008450.1.1	Tomato	extracellular, vacuole	25.91	28.65
KRH20939	Soybean	cytosol, mitochondrion	30.05	28.57
Solyc01g008660.2.1	Tomato	cytosol	24.61	27.62
Solyc09g091220.1.1	Tomato	cytosol	27.72	26.88
KRH72048	Soybean	cytosol	23.32	25.5
VIT_18s0041g01090.t01	Wine grape	cytosol	26.17	25.44
Bra014991.1-P	Field mustard	cytosol	24.35	25.41
AT3G23880.1	Thale cress	cytosol	23.83	25.27
KRH35047	Soybean	cytosol, peroxisome, plastid	25.65	25.19
Solyc12g099550.1.1	Tomato	cytosol	21.76	24.93

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	UniProt:K4CUW9	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc09g072930.1	EnsemblPlants:Solyc09g072930.1.1	TIGRFAMs:TIGR01640
UniParc:UPI000276B181	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:65606864..65608024

Molecular Weight (calculated)

44373.9 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.073

Length

386 amino acids

Sequence
(BLAST)

001: MENSISIPVL PAELVTEILS RLPVKFLLKF KCASKSWLAL ISSPEFAKTH LRLNANNNEY TRRHNKVMMF ERIVPSFRDC SVSSLYNNSC IEAKDLYYHR
101: QVPDCAYTVG SVNGLICLVS PEKELILWNP SIRKYKKLPT PKIKTTLGYC LYSFGYDEFR DDYKVVVLWN DNLSPQIEVQ KYSLKRDSWR WVDDCPSMVP
201: LTQSGNFVNG KIYWITSIHP NTRSIISIDL ADGKWGEMEL PCYWKGGRGL LLSFGVLAVL GSDLLIWCGF VETDMVDVWL RKEYGVKESW IKMFTLNILR
301: DLSVYGYLEP IHLYMASGSE ILVVLGSKFM IYNLKGDQLR SSKVINSYNW DEEEIYIESL VCPFSTVGTE DATKMVMKSL GCETMK

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.