Factsheet for VIT_05s0124g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01100.t01	Wine grape	cytosol	18.33	27.16
VIT_18s0041g01090.t01	Wine grape	cytosol	27.5	24.94
VIT_05s0124g00010.t01	Wine grape	extracellular	33.61	18.53

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100246361	EntrezGene:100251501	wikigene:100251501	MapMan:19.2.2.8.1.4.6	ProteinID:CCB61586
ProteinID:CCB61586.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I3R8
EMBL:FN596743	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
EntrezGene:LOC100246361	EntrezGene:LOC100251501	wikigene:LOC100251501	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF46	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0001983426	ArrayExpress:VIT_05s0124g00230	EnsemblPlantsGene:VIT_05s0124g00230	EnsemblPlants:VIT_05s0124g00230.t01	unigene:Vvi.24827	unigene:Vvi.3152
RefSeq:XP_002268486	RefSeq:XP_002268486.1	RefSeq:XP_019075550.1	:	:	:

Description

No Description!

Coordinates

chr5:-:20720443..20721540

Molecular Weight (calculated)

41370.2 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.181

Length

360 amino acids

Sequence
(BLAST)

001: MAILPDEIIE NILLRLPVKS LLRFRCVCKA WRALISDSEF AEMHYQQPQT QARSRVLISC PGRVIRSMDP DASGNDNSGV VNIDYPLEPS NLVFQILDSC
101: DGLLCVIDSF HNPALWNPST RQFNPLPKPS FLENSDILYG FTYDYSSDDY KIVRVVSTSR DVIKTEIDVF ELKTNEWRRV EETHYSRPAW DVGTFLNGAF
201: YWLAWRLSEG HEGFSRVVVS FDLKEERFKE VELPSDVGII NLRVFGGYLS AMYHDLYGEL TKMWVMEEKA GKDSWANVAT LPFRSENDSD GPLLCWFANF
301: LKNGGEFLLV INKWKLILYD FKTKTHKDIM FSGDLGLSIP VLYTETLVSP YCINETNEDV

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.