CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11897	Soybean	cytosol	81.39	93.91
PGSC0003DMT400011756	Potato	cytosol	71.39	71.39
VIT_05s0077g00570.t01	Wine grape	cytosol	61.67	70.25
Solyc12g099170.1.1	Tomato	cytosol	33.33	68.97
AT5G49610.1	Thale cress	cytosol	68.33	68.52
CDY05613	Canola	cytosol	66.94	66.94
CDY33892	Canola	cytosol	66.11	65.56
Bra020625.1-P	Field mustard	cytosol	65.56	65.01
GSMUA_Achr8P06320_001	Banana	cytosol, peroxisome, plastid	50.0	53.25

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100811223	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02005401	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_09G032600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	UniProt:I1L0N3	InterPro:IPR001810
EnsemblPlants:KRH36935	ProteinID:KRH36935	ProteinID:KRH36935.1	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR31264
PANTHER:PTHR31264:SF16	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00023CB810	:

Description

hypothetical protein

Coordinates

chr9:+:2755212..2757150

Molecular Weight (calculated)

41918.0 Da

IEP (calculated)

8.654

GRAVY (calculated)

-0.024

Length

360 amino acids

Sequence
(BLAST)

001: MDVRGDGIFP DEVVIQILAR LPVKSLFRFK TVCKLWYRLS LDKYFIQLYN EVSRKNPMIL VEISDSSESK TSLICVDNLR GVSEFSLNFL NDRVKVRASC
101: NGLLCCSSIP DKGVFYVCNP VTREYRLLPK SRERHVTRFY PDGEATLVGL ACDSAYRKFN VVLAGYHRMF GHRPDGSFIC LVFDSELNKW RKFVSFQDDH
201: FTHMNKNQVV FVNNALHWLT ASSTYILVLD LSCEVWRKMQ LPYDLICGTG NRIYLLDFDG CLSVIKISEA WMNIWVLKDY WKDEWCMVDK VSLRCIRGMV
301: PGIFPISQTG ECVFLATHKQ ILVYHRKTQV WKEMYSVKYS STLPLWFSAH AYRSTMFSCN

Best Arabidopsis Sequence Match ( AT5G49610.1 )
(BLAST)

001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN

Arabidopsis Description

F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.