Factsheet for PGSC0003DMT400011756

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099170.1.1	Tomato	cytosol	46.94	97.13
KRH36935	Soybean	cytosol	71.39	71.39
VIT_05s0077g00570.t01	Wine grape	cytosol	61.94	70.57
KRH11897	Soybean	cytosol	61.11	70.51
AT5G49610.1	Thale cress	cytosol	67.5	67.69
CDY05613	Canola	cytosol	65.28	65.28
CDY33892	Canola	cytosol	64.44	63.91
Bra020625.1-P	Field mustard	cytosol	64.17	63.64
GSMUA_Achr8P06320_001	Banana	cytosol, peroxisome, plastid	49.17	52.37

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102587170	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
UniProt:M1A037	PFAM:PF00646	PFAM:PF08268	EnsemblPlantsGene:PGSC0003DMG400004614	PGSC:PGSC0003DMG400004614	EnsemblPlants:PGSC0003DMT400011756
PFscan:PS50181	PANTHER:PTHR31264	PANTHER:PTHR31264:SF16	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000294A8AD	RefSeq:XP_015165249.1	SEG:seg	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004614]

Coordinates

chr12:+:59942615..59944982

Molecular Weight (calculated)

41880.0 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.101

Length

360 amino acids

Sequence
(BLAST)

001: MNSPYGVFPD EVILQILARL PVKSVFKTKV VCKVWYKLIS DKYFTNLYNE LSVKNPMVLV QVSEPSSESR SSLICIDNLK GVSEFSLDFV KDRVKVRACC
101: NGLLCLSSIP DKGVYYVCNP LTREYKLLPR SRERPITRFH PDGEASLVGL GCDLMKQKYN VVLAGYHRSF GHRPERTFIC MVYDSELNKW RKFVSLQDDQ
201: FTHMNKNQVV FINGGLHWLT DSCSCMLVLD LATDVWRKIQ LPHEISCGVR SRVYLLELDG RLSVIQIYEA WMVIWVMEDY EKEEWRMVDK VSLRCIRGMV
301: PGIFPISQND NYVYLATHKQ VLVYQRNSRV WKEMFSVKDS STLPLWFSAH AFRSTLFSCH

Best Arabidopsis Sequence Match ( AT5G49610.1 )
(BLAST)

001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN

Arabidopsis Description

F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.