Factsheet for VIT_05s0094g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035669	Potato	cytosol	52.2	80.47
Solyc08g015780.2.1	Tomato	cytosol	52.2	80.47
KRH01853	Soybean	cytosol	49.23	79.67
KRH51312	Soybean	cytosol	48.93	79.17
PGSC0003DMT400016554	Potato	cytosol	50.26	78.22
Solyc12g017540.1.1	Tomato	cytosol	49.64	77.02
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	44.43	76.99
GSMUA_Achr6P12560_001	Banana	cytosol	41.88	75.79
AT2G44090.1	Thale cress	cytosol	44.23	74.4
GSMUA_Achr3P02760_001	Banana	cytosol	46.88	73.68
CDX71861	Canola	cytosol	45.35	73.51
AT3G59910.2	Thale cress	cytosol	45.86	73.49
CDY05963	Canola	cytosol	45.05	73.01
CDY23417	Canola	cytosol	39.84	72.9
Bra007492.1-P	Field mustard	cytosol	44.94	72.85
CDY17887	Canola	cytosol	43.72	71.45
CDX79783	Canola	cytosol	44.02	71.0
Bra004804.1-P	Field mustard	cytosol	43.92	70.84
GSMUA_Achr6P18250_001	Banana	cytosol	43.62	68.87
HORVU5Hr1G007560.1	Barley	cytosol	16.14	68.4
GSMUA_AchrUn_...	Banana	cytosol	41.78	67.6
Os11t0246900-01	Rice	mitochondrion	39.22	66.67
TraesCS4D01G084700.1	Wheat	cytosol	40.14	63.28
TraesCS4B01G087400.1	Wheat	cytosol	40.04	63.12
Zm00001d049019_P003	Maize	cytosol	39.22	61.74
EES09541	Sorghum	nucleus	39.33	61.7
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	40.25	60.8
Os02t0562400-01	Rice	cytosol, extracellular	29.42	60.0
HORVU4Hr1G014910.1	Barley	mitochondrion	40.86	57.55
KXG30444	Sorghum	cytosol	31.66	52.63
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	16.55	48.5
Zm00001d016858_P001	Maize	cytosol	31.36	36.42

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100242432	wikigene:100242432	EntrezGene:100264716	wikigene:100264716	MapMan:35.1
EMBL:AM475052	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN70678	ProteinID:CAN70678.1	ProteinID:CCB49431
ProteinID:CCB49431.1	UniProt:F6HAZ5	EMBL:FN595507	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100242432
wikigene:LOC100242432	EntrezGene:LOC100264716	wikigene:LOC100264716	PANTHER:PTHR36024	SUPFAM:SSF48403	TIGR:TC52002
TMHMM:TMhelix	UniParc:UPI0002109AEE	ArrayExpress:VIT_05s0094g01540	EnsemblPlantsGene:VIT_05s0094g01540	EnsemblPlants:VIT_05s0094g01540.t01	unigene:Vvi.6210
RefSeq:XP_002276275	RefSeq:XP_002276275.1	RefSeq:XP_002276299	RefSeq:XP_002276299.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:24809122..24818854

Molecular Weight (calculated)

108405.0 Da

IEP (calculated)

6.473

GRAVY (calculated)

-0.013

Length

979 amino acids

Sequence
(BLAST)

001: MRQRGLILAA FISLVLFLLF IFISFNAHLL KSPLLLSIAP QEPSSALPQF SLLIGILTRA DKYDRRHFLR LVYGIQSSPV AHIDVKFIFC NLTKPEQRVL
101: VALEILRFED VIILNCMENM NSGKTYTYFS SLPQILRRQY DYVMKADDDV FIRLAPLALS LQPLPRLDLY YGFVIPCAST NPFVEYMSGM GFVLSWDLVE
201: WIGESDIPGN DTFGPEDKLV GKWLNMGNKA KNRFSNKPAM YDYPGTNGRC SHELIPETVA VHRLKRWDQW SNVLHFFNVT HQLKHYPEFR NILLAGFFSS
301: LSLSPSLCSP NLSGLVLDPL YFTANSGRFD KKGFLRILQL GFEDAAWDGR RERMEEEFIS VAGSNNLHSG NGTNPKDPLC AEMESNNNGI GHPKDASENF
401: SSENGEGSNV VFSREAPLVS KDSRTSGGCS CSPKKLKSRM VVTDSEPGKK DKVGNEKKLS RQDRIELGRM FQGAVSSHDW ELAESLILLA DPHTLNDALC
501: ISLDSIWFLS TQEELHGITS LIKKIISNGA YDFTRAALRT SFLASCVSAC QSRTMSLADT VTVMAQRLHE RLQECNGDEV LKAEAGAKVQ KFTEWALKCI
601: GFHSRCQGNR DRVSHSSAIE IQLQLSAFKM FLDLAGNHLT GKDFTEAFDA ACFPLTLFSS SFDPGWASGI SATAIQGLLG MLVEGGADNV NQCFLEASRF
701: GSTELVRILL QIAQRNSLDV DVDLALGFAS HYCKIGTMEC LVEEGNAIAF LGPLMRAAER GCMQVVQWFV RRGCRDMDLC LALTAATSSS QVGIAAYLLP
801: HVPQHVLAAL SIEILKAAGE RSGGSLDGVA FLLRSDFLGD PAATYAVADS IARSDDEAVA PELRAFLRQN WSEAAFLDGL REGQEHYMNI LRILKWGESP
901: ICLRDLPGPL LVAIAYLPLY RECVEASGCL LSQRLRGQLV EAVRRLGSGP LEEVKQGREL LAILKHHLPP FLLSVSSIG

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.