Factsheet for GSMUA_Achr3P02760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	75.44	83.19
GSMUA_Achr6P12560_001	Banana	cytosol	71.27	82.07
KRH01853	Soybean	cytosol	70.14	72.23
GSMUA_Achr6P18250_001	Banana	cytosol	71.75	72.1
KRH51312	Soybean	cytosol	69.5	71.57
PGSC0003DMT400016554	Potato	cytosol	71.27	70.59
GSMUA_AchrUn_...	Banana	cytosol	68.54	70.58
HORVU5Hr1G007560.1	Barley	cytosol	26.0	70.13
Solyc08g015780.2.1	Tomato	cytosol	70.95	69.61
Solyc12g017540.1.1	Tomato	cytosol	70.47	69.57
AT2G44090.1	Thale cress	cytosol	64.85	69.42
CDY23417	Canola	cytosol	59.55	69.35
PGSC0003DMT400035669	Potato	cytosol	70.63	69.29
AT3G59910.2	Thale cress	cytosol	67.42	68.74
CDX71861	Canola	cytosol	66.45	68.54
CDY05963	Canola	cytosol	65.97	68.05
Bra007492.1-P	Field mustard	cytosol	65.49	67.55
CDY17887	Canola	cytosol	64.85	67.45
Os11t0246900-01	Rice	mitochondrion	62.12	67.19
CDX79783	Canola	cytosol	65.01	66.72
Bra004804.1-P	Field mustard	cytosol	64.37	66.06
Os02t0562400-01	Rice	cytosol, extracellular	49.12	63.75
TraesCS4B01G087400.1	Wheat	cytosol	62.28	62.48
TraesCS4D01G084700.1	Wheat	cytosol	61.96	62.16
Zm00001d049019_P003	Maize	cytosol	61.32	61.41
EES09541	Sorghum	nucleus	61.16	61.06
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	61.8	59.41
HORVU4Hr1G014910.1	Barley	mitochondrion	63.08	56.55
KXG30444	Sorghum	cytosol	52.17	55.18
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	26.16	48.8
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	73.68	46.88
Zm00001d016858_P001	Maize	cytosol	52.65	38.91

Protein Annotations

EnsemblPlants:GSMUA_Achr3P02760_001	EnsemblPlants:GSMUA_Achr3T02760_001	EnsemblPlantsGene:GSMUA_Achr3G02760_001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002968B47
UniProt:M0SB94	MapMan:35.1	:	:	:	:

Description

F-box/ankyrin repeat protein SKIP35 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02760_001]

Coordinates

chr3:-:1796658..1802160

Molecular Weight (calculated)

68488.2 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.069

Length

623 amino acids

Sequence
(BLAST)

001: MDLVHLVKDN QAEDVLCSEM EIDENDVLSC MNDHHNVGSE KGEGSTVVFS REAPLLTKDA LISKDYGCGS KKIRSRASVL MEESEVRSKD KWKQEKKLSR
101: QDRIELGRLF QRVVSSQDSE LAENLIQLAD PQTLNDMLCI ALDSIWFLTN RQELNIITGL IKKIVANGAN EFTRAALRTS FLASCVSACQ SRTMSLADTV
201: GIMAQRLHER LQECHSDEVL KAEAGAKVQK FTEWALKCIG IHCRCQENKG RRNHSTIVEV QLQLSAFKTF LDIAGNHLSG KDFTEAFDAA CFPLTLFSSS
301: FEPGWASGTS ATAIQGLLGM LVEGGADNVN QCFLEASRFG STELVRILLQ IAQRNSLDVD VDLALGFASH YSKIGTMECL VEEGNAGAFL GPLMRAAERG
401: CMQVVEWFVT RGCKDMELCL ALTAAASSSQ VGIAAYLLPH IPQHVLAALS IEILKAAGER SSGSLDGVVF LLRSDFLGDP AATYAVADSM ARSSDESVAS
501: DLRAFLKEHW SEAAFAEGLR FGQDHFVNIM RIFRRGSSPI HLKDLPQPLV TAIAYLPLYR ECLEAGGQLL PQKLRGQLVE AAHRVSGRPV SKNSQTRELM
601: AILEHHLPTF FLQAPTVSRA AYR

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.