CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	KRH03466	AT3G47620.1	21798944
AT2G44090.1	KRH54542	AT3G47620.1	21798944
AT2G44090.1	KRH56919	AT3G47620.1	21798944
AT2G44090.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51312	Soybean	cytosol	95.87	95.87
PGSC0003DMT400016554	Potato	cytosol	77.69	74.72
PGSC0003DMT400035669	Potato	cytosol	78.02	74.33
GSMUA_Achr6P12560_001	Banana	cytosol	66.45	74.31
Solyc08g015780.2.1	Tomato	cytosol	77.69	74.02
Solyc12g017540.1.1	Tomato	cytosol	76.69	73.53
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	68.43	73.27
CDY23417	Canola	cytosol	63.14	71.4
AT2G44090.1	Thale cress	cytosol	68.43	71.13
GSMUA_Achr3P02760_001	Banana	cytosol	72.23	70.14
AT3G59910.2	Thale cress	cytosol	70.58	69.89
CDY17887	Canola	cytosol	68.43	69.12
CDX79783	Canola	cytosol	69.26	69.03
Bra004804.1-P	Field mustard	cytosol	68.93	68.7
CDX71861	Canola	cytosol	68.1	68.21
CDY05963	Canola	cytosol	67.93	68.05
Bra007492.1-P	Field mustard	cytosol	67.93	68.05
GSMUA_Achr6P18250_001	Banana	cytosol	67.11	65.48
Os11t0246900-01	Rice	mitochondrion	61.32	64.41
HORVU5Hr1G007560.1	Barley	cytosol	24.46	64.07
GSMUA_AchrUn_...	Banana	cytosol	63.14	63.14
TraesCS4D01G084700.1	Wheat	cytosol	62.64	61.03
TraesCS4B01G087400.1	Wheat	cytosol	62.64	61.03
EES09541	Sorghum	nucleus	60.83	58.97
Zm00001d049019_P003	Maize	cytosol	60.17	58.52
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	62.64	58.49
Os02t0562400-01	Rice	cytosol, extracellular	46.12	58.12
HORVU4Hr1G014910.1	Barley	mitochondrion	62.64	54.53
KXG30444	Sorghum	cytosol	51.41	52.8
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	79.67	49.23
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	24.79	44.91
Zm00001d016858_P001	Maize	cytosol	51.07	36.65

Protein Annotations

EMBL:ACUP02010286	EnsemblPlants:KRH01853	EnsemblPlantsGene:GLYMA_17G000500	EntrezGene:102659991	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	ProteinID:KRH01852.1	ProteinID:KRH01853
ProteinID:KRH01853.1	SUPFAM:SSF48403	UniParc:UPI00023D64B4	UniProt:K7MJ48	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr17:-:38903..42667

Molecular Weight (calculated)

66832.5 Da

IEP (calculated)

5.161

GRAVY (calculated)

0.008

Length

605 amino acids

Sequence
(BLAST)

001: MDETEVENPI FMEIKSEDKR NENQGFASEK GEGSSVVFSR EAPLMRKESR MSTPYCCNAK KLKSRDVTTD CELGSNEKFG LEKKLCRQDR IELGRLFQSA
101: VSSHDWELAE SLILVADPQT LNDALCITLD SIWFLSTELE LNGIMGFIKK IIANGAYDFT RAALRTSFLA SCVSACQSRT MSLADTVTVM AQRLHERLQE
201: CNGDEVLKAE AGAKVQKFTE WALKCIGIHS RLQDDRENVI HSSAVEIQLR LSAFKTFLDL AGSRLTGKDF SEAFDAACFP LTLFSSSFDP GWAFGLSATV
301: IQGLLGMLVE GGADNVNQCF LEASRFGSTE LVRILLQIAQ RNSLDVDVDL ALGFASHYGK IGTMECLVEE GNAIAFLGPL MRAAERGCMQ VVEWFVQRGC
401: RDMELCLALT AATSSCQVHI AAYLLPHVPQ QVLAALSVEI LKAAGERSGG SLDGVAFLLQ SDFLGDPAAT YAVADIIAKS EDEAVAPELK TFLKEHWSEG
501: AYKEGLRLGQ EHYMNLVRII RWGESPICLR DLPAPLTVAI AYLPLYRECV KTGGFLFSQR LRGQLVEAAR RLGNRVLDEV IHGRELVVVL EQHLPHFLLH
601: PTRIA

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.