Factsheet for Bra004804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79783	Canola	cytosol	98.85	98.85
AT2G44090.1	Thale cress	cytosol	81.38	84.88
Bra007492.1-P	Field mustard	cytosol	72.82	73.18
KRH01853	Soybean	cytosol	68.7	68.93
GSMUA_Achr6P12560_001	Banana	cytosol	61.28	68.76
KRH51312	Soybean	cytosol	68.53	68.76
PGSC0003DMT400016554	Potato	cytosol	71.17	68.68
Solyc12g017540.1.1	Tomato	cytosol	70.84	68.15
PGSC0003DMT400035669	Potato	cytosol	70.35	67.24
Solyc08g015780.2.1	Tomato	cytosol	70.18	67.09
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	61.45	66.02
GSMUA_Achr3P02760_001	Banana	cytosol	66.06	64.37
HORVU5Hr1G007560.1	Barley	cytosol	24.05	63.2
Os11t0246900-01	Rice	mitochondrion	58.32	61.46
GSMUA_Achr6P18250_001	Banana	cytosol	61.94	60.65
GSMUA_AchrUn_...	Banana	cytosol	58.81	59.01
Os02t0562400-01	Rice	cytosol, extracellular	46.13	58.33
EES09541	Sorghum	nucleus	59.64	58.01
Zm00001d049019_P003	Maize	cytosol	59.14	57.72
TraesCS4B01G087400.1	Wheat	cytosol	58.98	57.65
TraesCS4D01G084700.1	Wheat	cytosol	58.98	57.65
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	58.98	55.25
HORVU4Hr1G014910.1	Barley	mitochondrion	58.81	51.37
KXG30444	Sorghum	cytosol	48.27	49.75
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	25.54	46.41
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	70.84	43.92
Zm00001d016858_P001	Maize	cytosol	47.78	34.4

Protein Annotations

EnsemblPlants:Bra004804.1	EnsemblPlants:Bra004804.1-P	EnsemblPlantsGene:Bra004804	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002547C50
UniProt:M4CKR9	MapMan:35.1	:	:	:	:

Description

AT2G44090 (E=5e-272) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59910.1); Has 61 Blast hits to 61 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 40; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).

Coordinates

chrA05:-:1894119..1896095

Molecular Weight (calculated)

66696.8 Da

IEP (calculated)

4.986

GRAVY (calculated)

-0.096

Length

607 amino acids

Sequence
(BLAST)

001: MEKESVSDDD GLYPDEPFGS EFETEEILQV EKGEGSGVVF AREAPLIANQ PSEGFGCSTK KLKCSGDVDV LEMGSLGKEK KLSRQDRIEL GRLFQNATSS
101: QDWELSERMI DLADLQTLND LLCISLDSIW FLSTEGELRG ITGLIAKIIC HGAHDYTRAT LRTSFLASCV SSCRNRTVSL SDSVTVMAQR LHERLQECNG
201: DEVLKAEAST KVQKFTEWAL KCIGFHSRCQ GGARDKANQD SAAEIQLQLS AFKTFLDLAG NHLTGKDFTE AFDAACFPLT LFSTSFNPGW ASGISATVIH
301: GLLGMLVEGG ADNVNQCFLE ASRFGSTELV RILLQIAQRN SLDVDVDLAL GFASHYSKIE TMDCLVEEGH AMAFLGPLMR AAERGCMQVV EWFVKRGCRE
401: MELCLALTAA TSRSQVETAA YLLPHVPRPV LTALSIEILK AAGERSDGSL YGVEFLLKSD FLGDPVATYS VADTIAKSED ESVPSELKTF LQEQWSEAAL
501: SQGVRESREN FMNFMRVLKI GESAIRLKDL PGPLRVAVAY MPLYRECVKA GGRLLSQRLR GQLMEAVKQL QGIVVDTEEA CKGGHHHQLM AVLEHHLPLF
601: LVKASSH

Best Arabidopsis Sequence Match ( AT2G44090.5 )
(BLAST)

001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH

Arabidopsis Description

AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.