Factsheet for GSMUA_Achr6P18250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	75.32	77.19
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	68.87	75.58
GSMUA_Achr6P12560_001	Banana	cytosol	65.32	74.86
GSMUA_Achr3P02760_001	Banana	cytosol	72.1	71.75
KRH01853	Soybean	cytosol	65.48	67.11
CDY23417	Canola	cytosol	57.9	67.1
KRH51312	Soybean	cytosol	64.52	66.12
PGSC0003DMT400016554	Potato	cytosol	66.13	65.18
Os11t0246900-01	Rice	mitochondrion	60.48	65.1
AT2G44090.1	Thale cress	cytosol	60.97	64.95
Solyc08g015780.2.1	Tomato	cytosol	66.45	64.88
HORVU5Hr1G007560.1	Barley	cytosol	24.03	64.5
Solyc12g017540.1.1	Tomato	cytosol	65.65	64.5
PGSC0003DMT400035669	Potato	cytosol	65.97	64.41
CDX71861	Canola	cytosol	61.94	63.58
CDY05963	Canola	cytosol	61.61	63.24
AT3G59910.2	Thale cress	cytosol	62.1	63.01
Bra007492.1-P	Field mustard	cytosol	61.29	62.91
CDY17887	Canola	cytosol	60.48	62.6
CDX79783	Canola	cytosol	60.65	61.94
Bra004804.1-P	Field mustard	cytosol	60.65	61.94
Os02t0562400-01	Rice	cytosol, extracellular	47.42	61.25
TraesCS4B01G087400.1	Wheat	cytosol	60.81	60.71
TraesCS4D01G084700.1	Wheat	cytosol	60.81	60.71
EES09541	Sorghum	nucleus	60.65	60.26
Zm00001d049019_P003	Maize	cytosol	59.84	59.65
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	60.81	58.18
HORVU4Hr1G014910.1	Barley	mitochondrion	60.81	54.24
KXG30444	Sorghum	cytosol	49.68	52.29
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	24.19	44.91
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	68.87	43.62
Zm00001d016858_P001	Maize	cytosol	50.0	36.77

Protein Annotations

EnsemblPlants:GSMUA_Achr6P18250_001	EnsemblPlants:GSMUA_Achr6T18250_001	EnsemblPlantsGene:GSMUA_Achr6G18250_001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SUPFAM:SSF48403	UniParc:UPI000295162D	UniProt:M0T823
MapMan:35.1	:	:	:	:	:

Description

F-box/ankyrin repeat protein SKIP35 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18250_001]

Coordinates

chr6:-:12394803..12401252

Molecular Weight (calculated)

68384.1 Da

IEP (calculated)

4.789

GRAVY (calculated)

-0.019

Length

620 amino acids

Sequence
(BLAST)

001: MEVECKTVMT REDCMHLVQE RQPEKDFDEN GGLRAVHDGD EGEKVDGSNV VLLPLPADDH RISKDYACDG MKVGSRASNP LEELAVQTKE QGKNKQGKKL
101: SRRDRMELGR LFQEAVSSHD WELAESLVLL ADSQTLNDVL CIALDAIWFL TTWGELNGIT GLIKKIVSYG GSDFTRAILR TSFFASCVYA CHCRIMNLTD
201: TVGIMAQRLH ERLQECHGDE VLKAEAGMKV QKFTDWALKC IGFHFRYQEN RGGRKNNMIV EVQLQLSAFK TFLELAGDHL TGKDFTEAFD AACFPLTLFS
301: SSFDSGWALG ISAIAVQGLL GMLVEGGADN VNQCFLEASR FGSTELVRIL LQIAERNSLD IDVDLALVFA SHYCKIGTME CLVDEGHAVD FLGPLVRASE
401: RGCMQVVQWF VNRGCGDMEL CLALTAATSS SQVGVSAYLL PHIPQHVLAA LSIEILKAAG ERSRGSLDGV AFLLCSDFLG DPAATYAVAD SIARSNDEAV
501: APELRAFLLE QWSEAAFAEG LSSGQDHFVN FMRILRRGCS PICLMDLPPP LAATIAYMPL YRECMEAGGQ LLSQKLRGQL VEAARRIGGR WVDDDSQANE
601: LLEILERNLP RFFLQPLTTL

Best Arabidopsis Sequence Match ( AT2G44090.5 )
(BLAST)

001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH

Arabidopsis Description

AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.