Factsheet for TraesCS4A01G229000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, extracellular, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT2G44090.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT2G44090.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT2G44090.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT2G44090.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G084700.1	Wheat	cytosol	95.06	99.19
TraesCS4B01G087400.1	Wheat	cytosol	93.52	97.58
HORVU4Hr1G014910.1	Barley	mitochondrion	89.66	83.6
Os11t0246900-01	Rice	mitochondrion	72.84	81.94
EES09541	Sorghum	nucleus	73.77	76.6
Zm00001d049019_P003	Maize	cytosol	72.22	75.24
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	57.56	66.02
GSMUA_Achr6P12560_001	Banana	cytosol	55.09	65.99
KRH01853	Soybean	cytosol	58.49	62.64
CDY23417	Canola	cytosol	51.39	62.24
Solyc08g015780.2.1	Tomato	cytosol	60.96	62.2
KRH51312	Soybean	cytosol	58.02	62.15
GSMUA_Achr3P02760_001	Banana	cytosol	59.41	61.8
PGSC0003DMT400035669	Potato	cytosol	60.49	61.73
AT2G44090.1	Thale cress	cytosol	55.25	61.51
PGSC0003DMT400016554	Potato	cytosol	59.57	61.37
GSMUA_Achr6P18250_001	Banana	cytosol	58.18	60.81
Solyc12g017540.1.1	Tomato	cytosol	59.1	60.7
CDY05963	Canola	cytosol	55.56	59.6
CDX71861	Canola	cytosol	55.56	59.6
CDY17887	Canola	cytosol	55.09	59.6
Bra007492.1-P	Field mustard	cytosol	55.4	59.44
GSMUA_AchrUn_...	Banana	cytosol	55.4	59.34
Bra004804.1-P	Field mustard	cytosol	55.25	58.98
CDX79783	Canola	cytosol	54.94	58.65
AT3G59910.2	Thale cress	cytosol	55.09	58.43
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	60.8	40.25

Protein Annotations

EnsemblPlants:TraesCS4A01G229000.1	EnsemblPlantsGene:TraesCS4A01G229000	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	TIGR:cd00204	MapMan:35.1

Description

No Description!

Coordinates

chr4A:+:537530140..537533999

Molecular Weight (calculated)

70656.6 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.043

Length

648 amino acids

Sequence
(BLAST)

001: MPGAAPPFAH PIPICVPAGW IEGIRQEMDV EGKMNLEIGS KDMEVESKNL KLEEPLPSSA MDMDEPGVAE SGEVDDSNGS SKECPLTPRD SMTSKVPLAK
101: EPRSVSTDFG DELDLELGSG EPEPGRQQER KLSRQDRMEL SQLFQHAVSA HDWECADGLL AKADAQGLND VLCVAVDAIW FLSDKEELYA IVALIKRIVS
201: AGANDFTRAA LRTSFLASCV SACRGRTTSL ADAVSFMGQK LHERLQESHG DEVLKAEASA KVHKFTEWAL KCIGLHARVR ASRGKGNHGT IIEVQLQLSA
301: FKTFLDIADN DLTGKDFTEA FDAACFPLTL FSSTFDQGWA AGISAAAIQG LLELLVEGGA DNVNQCFLEA ARYGSTELVR ILLQIAQRNS LDIDVDLALG
401: FAAHYGKLET MGCLVEEGNT VAFLGPLMRA AERGCFQVVE WFVNRGCRDM ELCLALTAAT SSSQVEVAAY LLPLVPQLVL APLSIEIVKA AGERSTGSLQ
501: GVDFLLRSDF LNDPAATYAV ADSIARCADE AVDAKLRLFM LEQWSEEAFN KGFVSSQEHF VNITRIMQRG ESPVVLRQLP LQLVIAMAYL PLYRECVGSG
601: GRLLPQRLRG QLVEAAGRLE GRQLDRGMQQ SELLAILEHH LPRFLVQT

Best Arabidopsis Sequence Match ( AT2G44090.5 )
(BLAST)

001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH

Arabidopsis Description

AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.