Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44090.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT2G44090.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79783 | Canola | cytosol | 95.83 | 94.56 |
| AT2G44090.1 | Thale cress | cytosol | 82.14 | 84.54 |
| CDY23417 | Canola | cytosol | 74.79 | 83.74 |
| CDX71861 | Canola | cytosol | 73.29 | 72.68 |
| CDY05963 | Canola | cytosol | 73.29 | 72.68 |
| GSMUA_Achr6P12560_001 | Banana | cytosol | 62.6 | 69.32 |
| KRH01853 | Soybean | cytosol | 69.12 | 68.43 |
| KRH51312 | Soybean | cytosol | 68.78 | 68.1 |
| PGSC0003DMT400016554 | Potato | cytosol | 70.95 | 67.57 |
| Solyc12g017540.1.1 | Tomato | cytosol | 70.78 | 67.19 |
| PGSC0003DMT400035669 | Potato | cytosol | 70.62 | 66.61 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 62.77 | 66.55 |
| Solyc08g015780.2.1 | Tomato | cytosol | 70.45 | 66.46 |
| GSMUA_Achr3P02760_001 | Banana | cytosol | 67.45 | 64.85 |
| HORVU5Hr1G007560.1 | Barley | cytosol | 24.37 | 63.2 |
| Os11t0246900-01 | Rice | mitochondrion | 59.1 | 61.46 |
| GSMUA_Achr6P18250_001 | Banana | cytosol | 62.6 | 60.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.77 | 59.17 |
| Os02t0562400-01 | Rice | cytosol, extracellular | 46.74 | 58.33 |
| EES09541 | Sorghum | nucleus | 60.6 | 58.17 |
| Zm00001d049019_P003 | Maize | cytosol | 60.1 | 57.88 |
| TraesCS4D01G084700.1 | Wheat | cytosol | 59.77 | 57.65 |
| TraesCS4B01G087400.1 | Wheat | cytosol | 59.6 | 57.49 |
| TraesCS4A01G229000.1 | Wheat | cytosol, extracellular, plasma membrane | 59.6 | 55.09 |
| HORVU4Hr1G014910.1 | Barley | mitochondrion | 59.43 | 51.22 |
| KXG30444 | Sorghum | cytosol | 49.58 | 50.42 |
| HORVU3Hr1G051770.2 | Barley | cytosol, mitochondrion | 25.88 | 46.41 |
| VIT_05s0094g01540.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 71.45 | 43.72 |
| Zm00001d016858_P001 | Maize | cytosol | 48.75 | 34.64 |
Protein Annotations
| EnsemblPlants:CDY17887 | EnsemblPlantsGene:GSBRNA2T00002230001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PANTHER:PTHR36024 | ProteinID:CDY17887 | ProteinID:CDY17887.1 | SEG:seg | SUPFAM:SSF48403 |
| UniParc:UPI0004EE3A95 | UniProt:A0A078FYJ5 | MapMan:35.1 | : | : | : |
Description
BnaC04g03320DBnaC04g03320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYJ5]
Coordinates
chrLK032079:+:332376..335221
Molecular Weight (calculated)
65981.8 Da
IEP (calculated)
5.158
GRAVY (calculated)
-0.124
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKESVSDDD GLYPDEPFGS EFEITAHSSK EEKGEGSGVV FAREAPLIVG NRQAKCSGDV DVLEKGSLRK EKKLSRQDRI ELGRLFQNAT SSQDWELSER
101: MIDLADLQTL NDLLCISLDS IWFLSTEGEL RGITGLIAKI ICHGAHDYTR ATLRTSFLAS CVSSCRNRTV SLSDSVTVMA QRLHERLQEC NGDEVLKAEA
201: STKVQKFTEW ALKCIGFHSR CQGGARDKAN QDSAAEIQLQ LSAFKTFLDL AGNHLTGKDF TEAFDAACFP LTLFSTSFNP GWASGISATV IHGLLGMLVE
301: GGADNVNQCF LEASRFGSTE LVRILLQIAQ RNSLDVDVDL ALGFASHYSK IETMDCLVEE GHAMAFLGPL MRAAERGCMQ VVEWFVKRGC REMELCLALT
401: AATSSSQVEI AAYLLPHVPR PVLTALSIEI LKAAGERSDG SLYGVEFLLK SDFLGDPVAT YSVADTIANS EDESVPSELK TFLQEHWSEA ALSQGVRESR
501: DDFMNFMRVL KNGESAIRLK DLPGPLRVAV AYMPLYRECV KAGGRLLSQR LRGQLMEAVK QLQGIGVDTE EVWKGGHHHQ LMAVLEHHLP LFLVKAYSH
101: MIDLADLQTL NDLLCISLDS IWFLSTEGEL RGITGLIAKI ICHGAHDYTR ATLRTSFLAS CVSSCRNRTV SLSDSVTVMA QRLHERLQEC NGDEVLKAEA
201: STKVQKFTEW ALKCIGFHSR CQGGARDKAN QDSAAEIQLQ LSAFKTFLDL AGNHLTGKDF TEAFDAACFP LTLFSTSFNP GWASGISATV IHGLLGMLVE
301: GGADNVNQCF LEASRFGSTE LVRILLQIAQ RNSLDVDVDL ALGFASHYSK IETMDCLVEE GHAMAFLGPL MRAAERGCMQ VVEWFVKRGC REMELCLALT
401: AATSSSQVEI AAYLLPHVPR PVLTALSIEI LKAAGERSDG SLYGVEFLLK SDFLGDPVAT YSVADTIANS EDESVPSELK TFLQEHWSEA ALSQGVRESR
501: DDFMNFMRVL KNGESAIRLK DLPGPLRVAV AYMPLYRECV KAGGRLLSQR LRGQLMEAVK QLQGIGVDTE EVWKGGHHHQ LMAVLEHHLP LFLVKAYSH
001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
Arabidopsis Description
AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.