Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05963 | Canola | cytosol | 96.69 | 96.69 |
| AT3G59910.2 | Thale cress | cytosol | 88.58 | 87.56 |
| CDY23417 | Canola | cytosol | 65.89 | 74.39 |
| CDY17887 | Canola | cytosol | 72.68 | 73.29 |
| CDX79783 | Canola | cytosol | 73.01 | 72.65 |
| GSMUA_Achr6P12560_001 | Banana | cytosol | 63.91 | 71.35 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 64.57 | 69.03 |
| KRH51312 | Soybean | cytosol | 69.04 | 68.93 |
| Solyc08g015780.2.1 | Tomato | cytosol | 71.85 | 68.35 |
| PGSC0003DMT400035669 | Potato | cytosol | 71.69 | 68.19 |
| KRH01853 | Soybean | cytosol | 68.21 | 68.1 |
| PGSC0003DMT400016554 | Potato | cytosol | 70.2 | 67.41 |
| Solyc12g017540.1.1 | Tomato | cytosol | 69.54 | 66.56 |
| GSMUA_Achr3P02760_001 | Banana | cytosol | 68.54 | 66.45 |
| Os11t0246900-01 | Rice | mitochondrion | 59.27 | 62.15 |
| GSMUA_Achr6P18250_001 | Banana | cytosol | 63.58 | 61.94 |
| HORVU5Hr1G007560.1 | Barley | cytosol | 23.51 | 61.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.26 | 61.16 |
| Os02t0562400-01 | Rice | cytosol, extracellular | 46.36 | 58.33 |
| TraesCS4B01G087400.1 | Wheat | cytosol | 59.93 | 58.29 |
| TraesCS4D01G084700.1 | Wheat | cytosol | 59.77 | 58.13 |
| Zm00001d049019_P003 | Maize | cytosol | 58.61 | 56.91 |
| EES09541 | Sorghum | nucleus | 58.61 | 56.73 |
| TraesCS4A01G229000.1 | Wheat | cytosol, extracellular, plasma membrane | 59.6 | 55.56 |
| HORVU4Hr1G014910.1 | Barley | mitochondrion | 59.77 | 51.94 |
| KXG30444 | Sorghum | cytosol | 48.34 | 49.58 |
| HORVU3Hr1G051770.2 | Barley | cytosol, mitochondrion | 25.5 | 46.11 |
| VIT_05s0094g01540.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 73.51 | 45.35 |
| Zm00001d016858_P001 | Maize | cytosol | 48.01 | 34.4 |
Protein Annotations
| EnsemblPlants:CDX71861 | EnsemblPlantsGene:GSBRNA2T00155591001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PANTHER:PTHR36024 | ProteinID:CDX71861 | ProteinID:CDX71861.1 | SEG:seg | SUPFAM:SSF48403 |
| UniParc:UPI0004EAF47F | MapMan:35.1 | : | : | : | : |
Description
BnaC08g30130D
Coordinates
chrLK031795:+:891257..894887
Molecular Weight (calculated)
66577.7 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.088
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEAVFDDI KLSEDEIYYP DEPYCSEKNE EGEGGSNVVF SREAPLIGKD PAGTSPGECC GCSAKKLNFK ASEDLIDKEN NSQQKKLSRQ ERIELGRVFQ
101: GAVTSMDWER AERLIQLADP LTLNDFLCVG LDSVWFLTTK QEFQGITGLI KKIVCHGAHD FTRATLRTSF LASCVSACHS RTMSLADSVT VMAQRLQERL
201: QECNGDEILK AEAGAKVQKF TEWALKCIGF HSRCQRARDR VSHSSPTEIE LQLSAFKMFL ELAGNHLSGR DFTEAFDAAC FPLTLFSNSF DPGWASGISS
301: TVIQGLLGML VEGGADNVNQ CFLEASRFGS TELVRVLLHI AQRNSLDVDV DLALGFASHY CKLGTMKCLV EEGNAIAFLG PLMRAAERGC MQVVQWFVKR
401: GCRDMELCLA LTAATSSSQV EVAAYLLPFV PSPVLTALSI EILKAAGERS GGSLQGVEFL LKSDFLGDPT ATYSVADSIA RSSDDESVPS DLKSFLREHW
501: SESAFEKGMR ESHEDFMNFM RVLKRGECAI SLRDLPAPLR VAIAYMPLYR ECVNAGGRLL SQRLRGQLVE AVRQLQGCDV PVVEVGETPR LMAVLEHHLT
601: AIFC
101: GAVTSMDWER AERLIQLADP LTLNDFLCVG LDSVWFLTTK QEFQGITGLI KKIVCHGAHD FTRATLRTSF LASCVSACHS RTMSLADSVT VMAQRLQERL
201: QECNGDEILK AEAGAKVQKF TEWALKCIGF HSRCQRARDR VSHSSPTEIE LQLSAFKMFL ELAGNHLSGR DFTEAFDAAC FPLTLFSNSF DPGWASGISS
301: TVIQGLLGML VEGGADNVNQ CFLEASRFGS TELVRVLLHI AQRNSLDVDV DLALGFASHY CKLGTMKCLV EEGNAIAFLG PLMRAAERGC MQVVQWFVKR
401: GCRDMELCLA LTAATSSSQV EVAAYLLPFV PSPVLTALSI EILKAAGERS GGSLQGVEFL LKSDFLGDPT ATYSVADSIA RSSDDESVPS DLKSFLREHW
501: SESAFEKGMR ESHEDFMNFM RVLKRGECAI SLRDLPAPLR VAIAYMPLYR ECVNAGGRLL SQRLRGQLVE AVRQLQGCDV PVVEVGETPR LMAVLEHHLT
601: AIFC
001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
Arabidopsis Description
SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.