Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44090.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g017540.1.1 | Tomato | cytosol | 95.23 | 94.93 |
| PGSC0003DMT400035669 | Potato | cytosol | 83.94 | 83.15 |
| KRH51312 | Soybean | cytosol | 75.04 | 78.02 |
| KRH01853 | Soybean | cytosol | 74.72 | 77.69 |
| GSMUA_Achr6P12560_001 | Banana | cytosol | 63.91 | 74.31 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 66.14 | 73.63 |
| CDY23417 | Canola | cytosol | 62.0 | 72.9 |
| AT2G44090.1 | Thale cress | cytosol | 67.41 | 72.85 |
| GSMUA_Achr3P02760_001 | Banana | cytosol | 70.59 | 71.27 |
| CDX79783 | Canola | cytosol | 68.68 | 71.17 |
| Bra004804.1-P | Field mustard | cytosol | 68.68 | 71.17 |
| CDY17887 | Canola | cytosol | 67.57 | 70.95 |
| AT3G59910.2 | Thale cress | cytosol | 68.68 | 70.7 |
| CDY05963 | Canola | cytosol | 67.41 | 70.2 |
| Bra007492.1-P | Field mustard | cytosol | 67.41 | 70.2 |
| CDX71861 | Canola | cytosol | 67.41 | 70.2 |
| Os11t0246900-01 | Rice | mitochondrion | 60.73 | 66.32 |
| GSMUA_Achr6P18250_001 | Banana | cytosol | 65.18 | 66.13 |
| HORVU5Hr1G007560.1 | Barley | cytosol | 24.17 | 65.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.69 | 64.13 |
| TraesCS4D01G084700.1 | Wheat | cytosol | 61.37 | 62.16 |
| TraesCS4B01G087400.1 | Wheat | cytosol | 61.37 | 62.16 |
| EES09541 | Sorghum | nucleus | 61.05 | 61.54 |
| Zm00001d049019_P003 | Maize | cytosol | 60.57 | 61.25 |
| TraesCS4A01G229000.1 | Wheat | cytosol, extracellular, plasma membrane | 61.37 | 59.57 |
| Os02t0562400-01 | Rice | cytosol, extracellular | 44.83 | 58.75 |
| PGSC0003DMT400016552 | Potato | cytosol | 28.93 | 58.33 |
| HORVU4Hr1G014910.1 | Barley | mitochondrion | 61.05 | 55.25 |
| KXG30444 | Sorghum | cytosol | 49.13 | 52.46 |
| VIT_05s0094g01540.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 78.22 | 50.26 |
| HORVU3Hr1G051770.2 | Barley | cytosol, mitochondrion | 24.17 | 45.51 |
| Zm00001d016858_P001 | Maize | cytosol | 48.49 | 36.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016554 | EnsemblPlantsGene:PGSC0003DMG402006465 | EntrezGene:102586364 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:IPR020683 | InterPro:IPR036770 | PANTHER:PTHR36024 | PGSC:PGSC0003DMG402006465 | RefSeq:XP_006344945.1 | RefSeq:XP_015163120.1 |
| SEG:seg | SUPFAM:SSF48403 | UniParc:UPI0002948246 | UniProt:M1A7U9 | MapMan:35.1 | : |
Description
F-box/ankyrin repeat protein SKIP35 [Source:PGSC_GENE;Acc:PGSC0003DMG402006465]
Coordinates
chr12:-:11290963..11297470
Molecular Weight (calculated)
67926.2 Da
IEP (calculated)
4.911
GRAVY (calculated)
0.046
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDKAAFVG NSISEEKTVF SEMEVETADM EISDRNDENV VLPSEKGEGS NGNVVFSREA PLVHKDFRSS VVAGGCSCGV NKIKSGIAIS DLELGKSEKS
101: GLEKKLSRQN RIELGRLFQG AVSDHDWELA ESLILLADPQ TLNDALCIGL DSIWFLSNQD ELYGITGLIK KIIANGAYDF TRAALRTSFL ASCVSACQSR
201: TMGLADTVTV MAQSRLHERL QECSGDEILK AEAGAKVQKF TEWALKCIGF HSRCQGKRDT VGHNSAVEIQ LQLSAFKTFL DLAGNHLTGK DFTEAFDAAC
301: FPLTLFSSSF DTCWASGISA TAIQGLLGML VDGGADNVNQ CFLEASRFGS TELVRILLQI AQRNSLDVDV ELALGFASHY SKIGTMECLV EEGNAMSFLG
401: PLMRAAERGC MQVVEWFVKR GCRDMELCLA LTAATSSSQV AVAAYLLPHV PKHVLAALSI EILKAAGERS SGSLDGVAFL LHSDFLGDPV ATYAVADSIA
501: KSDDDAVAPG LRSFLREHWS EAAFSDGLQQ GKEHYLNFVR IVNCGESPIC LKDLPGPLRV AIAYLPLYRE SVKVGGCCLL SQRLRGQLVE AAKRLGGVVL
601: EEANQGKELV AVLEHHLPPF LLNASSAAY
101: GLEKKLSRQN RIELGRLFQG AVSDHDWELA ESLILLADPQ TLNDALCIGL DSIWFLSNQD ELYGITGLIK KIIANGAYDF TRAALRTSFL ASCVSACQSR
201: TMGLADTVTV MAQSRLHERL QECSGDEILK AEAGAKVQKF TEWALKCIGF HSRCQGKRDT VGHNSAVEIQ LQLSAFKTFL DLAGNHLTGK DFTEAFDAAC
301: FPLTLFSSSF DTCWASGISA TAIQGLLGML VDGGADNVNQ CFLEASRFGS TELVRILLQI AQRNSLDVDV ELALGFASHY SKIGTMECLV EEGNAMSFLG
401: PLMRAAERGC MQVVEWFVKR GCRDMELCLA LTAATSSSQV AVAAYLLPHV PKHVLAALSI EILKAAGERS SGSLDGVAFL LHSDFLGDPV ATYAVADSIA
501: KSDDDAVAPG LRSFLREHWS EAAFSDGLQQ GKEHYLNFVR IVNCGESPIC LKDLPGPLRV AIAYLPLYRE SVKVGGCCLL SQRLRGQLVE AAKRLGGVVL
601: EEANQGKELV AVLEHHLPPF LLNASSAAY
001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
Arabidopsis Description
SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.