CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	EER88112	AT3G47620.1	21798944
AT2G44090.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0562400-01	Rice	cytosol, extracellular	61.97	76.04
Zm00001d016858_P001	Maize	cytosol	93.55	65.36
GSMUA_Achr6P12560_001	Banana	cytosol	52.29	56.93
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	52.63	54.87
CDY23417	Canola	cytosol	47.54	52.34
GSMUA_Achr3P02760_001	Banana	cytosol	55.18	52.17
KRH01853	Soybean	cytosol	52.8	51.41
AT2G44090.1	Thale cress	cytosol	50.08	50.69
KRH51312	Soybean	cytosol	51.95	50.58
GSMUA_Achr6P18250_001	Banana	cytosol	52.29	49.68
CDY17887	Canola	cytosol	50.42	49.58
GSMUA_AchrUn_...	Banana	cytosol	50.59	49.26
Solyc12g017540.1.1	Tomato	cytosol	52.63	49.13
PGSC0003DMT400016554	Potato	cytosol	52.46	49.13
AT3G59910.2	Thale cress	cytosol	50.59	48.77
CDY05963	Canola	cytosol	49.92	48.68
Solyc08g015780.2.1	Tomato	cytosol	52.46	48.66
CDX79783	Canola	cytosol	50.08	48.6
Bra007492.1-P	Field mustard	cytosol	49.75	48.51
PGSC0003DMT400035669	Potato	cytosol	52.29	48.5
CDX71861	Canola	cytosol	49.58	48.34
Bra004804.1-P	Field mustard	cytosol	49.75	48.27
EES09541	Sorghum	nucleus	48.39	45.67
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	52.63	31.66

Protein Annotations

EnsemblPlants:KXG30444	EnsemblPlantsGene:SORBI_3004G181900	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR36024	ProteinID:KXG30444	ProteinID:KXG30444.1	SEG:seg	SUPFAM:SSF48403
UniParc:UPI0001C80D48	UniProt:A0A194YQD9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:53534487..53539534

Molecular Weight (calculated)

64313.9 Da

IEP (calculated)

5.355

GRAVY (calculated)

0.033

Length

589 amino acids

Sequence
(BLAST)

001: MFEQGKPRSI RAKAKKSPFV EVEADEIGQA SGVVFARESA LAPKNDQGCG VSHSHGDDET QESDGCVQSQ GLDEHGWVDF GHSLQLVLFS RQWSLAESLV
101: DLADQQSMLD YGLSIALDAI WFLRTKRDLE GLNSLIVKIV ASGAKDFARA ILRTSLLASC VAACQSKAIT VGDSKEIVAE RLHERLRDCP GAEHLKIEAG
201: AKVQKFMEWA LQCIHMHHCS EDTHRCRWSC NTLQEVQLHL SAFRTFLDIA GDNLSGKIFT EAFDAVCFPL TLFSSLFEPG WSSGSSAVSI KGLLSLLVEG
301: GADNVNQCFL EAARFGSTEL VRILLEVAYQ NSLAVDTELA LVYASHYCKF NTMECLVDEG NVNSFLSPLI KAAERGCLQV VHWFVSRGIS EIEMCLALTT
401: AASSGHFMVA SYLLAHIPQQ ILEALSTQIL KAARGQGSRS LDGVTFLLRS NFLRDAAATY EAADIIATGG TNGEPPDLVA FLKEHWSQSA FAEGVTTGEM
501: HFVNVMRVLR RGASPICLED LPSEMVLGIT YLPLYRECVS AGGQLLPQRL RGELLEAVHR LGEPAGTESQ GKDLVRTLER HMPSFLVGS

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.