Factsheet for GSMUA_Achr6P12560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	84.29	80.71
GSMUA_Achr3P02760_001	Banana	cytosol	82.07	71.27
CDY23417	Canola	cytosol	67.47	68.22
KRH51312	Soybean	cytosol	74.49	66.61
KRH01853	Soybean	cytosol	74.31	66.45
HORVU5Hr1G007560.1	Barley	cytosol	28.1	65.8
AT2G44090.1	Thale cress	cytosol	70.43	65.46
GSMUA_Achr6P18250_001	Banana	cytosol	74.86	65.32
GSMUA_AchrUn_...	Banana	cytosol	72.09	64.46
CDY05963	Canola	cytosol	71.72	64.24
PGSC0003DMT400016554	Potato	cytosol	74.31	63.91
Bra007492.1-P	Field mustard	cytosol	71.35	63.91
CDX71861	Canola	cytosol	71.35	63.91
Os11t0246900-01	Rice	mitochondrion	67.84	63.72
AT3G59910.2	Thale cress	cytosol	71.72	63.5
Solyc12g017540.1.1	Tomato	cytosol	73.94	63.39
PGSC0003DMT400035669	Potato	cytosol	74.12	63.15
Solyc08g015780.2.1	Tomato	cytosol	74.12	63.15
CDY17887	Canola	cytosol	69.32	62.6
CDX79783	Canola	cytosol	69.13	61.61
Bra004804.1-P	Field mustard	cytosol	68.76	61.28
Os02t0562400-01	Rice	cytosol, extracellular	53.42	60.21
TraesCS4B01G087400.1	Wheat	cytosol	66.36	57.81
TraesCS4D01G084700.1	Wheat	cytosol	66.17	57.65
EES09541	Sorghum	nucleus	65.8	57.05
Zm00001d049019_P003	Maize	cytosol	65.25	56.75
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	65.99	55.09
KXG30444	Sorghum	cytosol	56.93	52.29
HORVU4Hr1G014910.1	Barley	mitochondrion	66.36	51.65
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	27.91	45.21
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	75.79	41.88
Zm00001d016858_P001	Maize	cytosol	56.75	36.42

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12560_001	EnsemblPlants:GSMUA_Achr6T12560_001	EnsemblPlantsGene:GSMUA_Achr6G12560_001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002962F60
UniProt:M0T6F4	MapMan:35.1	:	:	:	:

Description

F-box/ankyrin repeat protein SKIP35 [Source:GMGC_GENE;Acc:GSMUA_Achr6G12560_001]

Coordinates

chr6:-:8378026..8381888

Molecular Weight (calculated)

59218.4 Da

IEP (calculated)

6.663

GRAVY (calculated)

0.023

Length

541 amino acids

Sequence
(BLAST)

001: MESEIRRKDK NKQEKKLSRK DRIELGRLFQ GALSSQDLEL AENFILLADP QTLNDMLCIT LDSIWFLTTK QELNGVTGMI KKIVANGAND FTRATLRTSF
101: LASCVSACQS KTMSLADTVG IMAQRLHERL RECHGDEVLK AEAGVKVQKF TDWALKCIGI HSRSRKDRDR RSYSTIFEVQ LQLSAFKSFL DLAGNSLTGK
201: DFTEAFDAAC FPLTLFSSSF DPGWAFGISA TVIQGLLGML VEGGADNVNQ CFLEASRFGS TELVRILLQI AQRNSLDVDV ELALGFASHH CKIGTMECLV
301: EEGNAGAFLG PLLRAAERGC MQVVQWFVDR GCRDMELCIA LTASVASSQV GIAAYLLPRI PEHVLAALSI EILKAAAERS SGSLAGVEFL LRNNFLGDPV
401: ATYAVADSIA ESSDEAVAPD LRAFLKEHWS EAAFAEGLNY GQNHFVNFMR ILRRGGSPIC LRDLPPSLVT AIAYLSLYRE CRKAGGLLLP QKLRGQLVEA
501: ASKVAGRPVD KNSQAGDLMA VLEHHLPTFF LQSPTTTSPP L

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.