Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44090.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g015780.2.1 | Tomato | cytosol | 97.8 | 97.8 |
| PGSC0003DMT400016554 | Potato | cytosol | 83.15 | 83.94 |
| KRH01853 | Soybean | cytosol | 74.33 | 78.02 |
| KRH51312 | Soybean | cytosol | 74.17 | 77.85 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 65.98 | 74.16 |
| GSMUA_Achr6P12560_001 | Banana | cytosol | 63.15 | 74.12 |
| CDY23417 | Canola | cytosol | 61.89 | 73.46 |
| AT2G44090.1 | Thale cress | cytosol | 67.24 | 73.37 |
| AT3G59910.2 | Thale cress | cytosol | 70.08 | 72.83 |
| CDX71861 | Canola | cytosol | 68.19 | 71.69 |
| CDY05963 | Canola | cytosol | 68.19 | 71.69 |
| Bra007492.1-P | Field mustard | cytosol | 68.03 | 71.52 |
| GSMUA_Achr3P02760_001 | Banana | cytosol | 69.29 | 70.63 |
| CDY17887 | Canola | cytosol | 66.61 | 70.62 |
| CDX79783 | Canola | cytosol | 67.24 | 70.35 |
| Bra004804.1-P | Field mustard | cytosol | 67.24 | 70.35 |
| HORVU5Hr1G007560.1 | Barley | cytosol | 24.41 | 67.1 |
| Os11t0246900-01 | Rice | mitochondrion | 59.84 | 65.97 |
| GSMUA_Achr6P18250_001 | Banana | cytosol | 64.41 | 65.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.42 | 64.46 |
| TraesCS4D01G084700.1 | Wheat | cytosol | 61.42 | 62.8 |
| TraesCS4B01G087400.1 | Wheat | cytosol | 61.42 | 62.8 |
| EES09541 | Sorghum | nucleus | 60.47 | 61.54 |
| Zm00001d049019_P003 | Maize | cytosol | 60.0 | 61.25 |
| TraesCS4A01G229000.1 | Wheat | cytosol, extracellular, plasma membrane | 61.73 | 60.49 |
| Os02t0562400-01 | Rice | cytosol, extracellular | 44.72 | 59.17 |
| HORVU4Hr1G014910.1 | Barley | mitochondrion | 61.73 | 56.4 |
| PGSC0003DMT400016552 | Potato | cytosol | 26.93 | 54.81 |
| KXG30444 | Sorghum | cytosol | 48.5 | 52.29 |
| VIT_05s0094g01540.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 80.47 | 52.2 |
| HORVU3Hr1G051770.2 | Barley | cytosol, mitochondrion | 25.04 | 47.6 |
| Zm00001d016858_P001 | Maize | cytosol | 48.35 | 36.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035669 | EnsemblPlantsGene:PGSC0003DMG400013719 | EntrezGene:102591014 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:IPR020683 | InterPro:IPR036770 | PANTHER:PTHR36024 | PGSC:PGSC0003DMG400013719 | RefSeq:XP_006351083.1 | SUPFAM:SSF48403 |
| UniParc:UPI0002963F56 | UniProt:M1B2N0 | MapMan:35.1 | : | : | : |
Description
F-box/ankyrin repeat protein SKIP35 [Source:PGSC_GENE;Acc:PGSC0003DMG400013719]
Coordinates
chr8:-:8353178..8359325
Molecular Weight (calculated)
68793.2 Da
IEP (calculated)
4.970
GRAVY (calculated)
-0.011
Length
635 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDGITFVA GSENLESGIK INAEESQCFE MEVESCETGT LGVSNESVVF PSENGEGSNG NMVFSRESPL VRKGFRSSAV VGGCNCGVNK LKARMASSDG
101: EIGKNEKSGA EKKLNRQERI ELGRLFQGAV SCHDWELAES LILLADPQTL NDALCIALDS VWFLSTQQEL YGITGLIKKI ISNGAFDFTR AALRTSFLAS
201: CVSACQSRTM SLTDTVTVMA QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGNRDRVGH NPAVEIQLQL SAFKTFLDLA GNHLSGKDFT
301: EAFDAACFPL TLFSSSFDPG WASGISATAI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRILLQIAQR NSLDVDVDLA LGFASHYGKI GTMECLVEEG
401: NAMAFLGPLM RAAERGSMQV VDWFVKRGCR DMELCLALTA ATSSSQVEVA RYLLPHVPQH VLTALSIEIL KAAGERSSGS LDGVAFLLSS DFLGDPIATY
501: AVADSIAKSD DEAVAPALRS FLREHWSEAA FSDGLRQGQE HYCNLVRIIK WGESPVCLRD IPGPLRIAIA YLPLYRECVK AGGCLLSQRL KGQLVEAAKR
601: LDGVVLEEVK QGRELLAVLE HHLPPFLHSN ASNAA
101: EIGKNEKSGA EKKLNRQERI ELGRLFQGAV SCHDWELAES LILLADPQTL NDALCIALDS VWFLSTQQEL YGITGLIKKI ISNGAFDFTR AALRTSFLAS
201: CVSACQSRTM SLTDTVTVMA QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGNRDRVGH NPAVEIQLQL SAFKTFLDLA GNHLSGKDFT
301: EAFDAACFPL TLFSSSFDPG WASGISATAI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRILLQIAQR NSLDVDVDLA LGFASHYGKI GTMECLVEEG
401: NAMAFLGPLM RAAERGSMQV VDWFVKRGCR DMELCLALTA ATSSSQVEVA RYLLPHVPQH VLTALSIEIL KAAGERSSGS LDGVAFLLSS DFLGDPIATY
501: AVADSIAKSD DEAVAPALRS FLREHWSEAA FSDGLRQGQE HYCNLVRIIK WGESPVCLRD IPGPLRIAIA YLPLYRECVK AGGCLLSQRL KGQLVEAAKR
601: LDGVVLEEVK QGRELLAVLE HHLPPFLHSN ASNAA
001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
Arabidopsis Description
SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.