Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016554 | Potato | cytosol | 58.33 | 28.93 |
| PGSC0003DMT400035669 | Potato | cytosol | 54.81 | 26.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016552 | EnsemblPlantsGene:PGSC0003DMG401006465 | PANTHER:PTHR36024 | PGSC:PGSC0003DMG401006465 | UniParc:UPI00029661D1 | UniProt:M1A7U7 |
| MapMan:35.1 | : | : | : | : | : |
Description
F-box/ankyrin repeat protein SKIP35 [Source:PGSC_GENE;Acc:PGSC0003DMG401006465]
Coordinates
chr12:-:11293757..11296269
Molecular Weight (calculated)
34313.2 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.672
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLADTVTVM AQRLHERLQE CSGDEILKAE AGAKVQKFTE WALKCIGFHS RCQGKRDTVG HNSAVEIQLQ LSAFKTFLDL AGNHLTGKDF TEAFDAACFP
101: LTLFSSSFDT CWASGISATA IQGLLGMLVD GGADNVNQCF LEASRFGSTE LVRILLQFLG CAYKALKKKE AFGKQLDSKG NSRNNKDPTI KKNTSDNENE
201: VKHTTNKRNP TSSVLTIWAP PDNQHKETGE KGSADHKAPQ GYQGGLVQDL GTNNRENNSS QKEDKVETQN DASTQEPNPL QIIIPDTSLS EAPEIEDMPI
301: EKKQHRRDTR GR
101: LTLFSSSFDT CWASGISATA IQGLLGMLVD GGADNVNQCF LEASRFGSTE LVRILLQFLG CAYKALKKKE AFGKQLDSKG NSRNNKDPTI KKNTSDNENE
201: VKHTTNKRNP TSSVLTIWAP PDNQHKETGE KGSADHKAPQ GYQGGLVQDL GTNNRENNSS QKEDKVETQN DASTQEPNPL QIIIPDTSLS EAPEIEDMPI
301: EKKQHRRDTR GR
001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
Arabidopsis Description
AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.