Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G084700.1 | Wheat | cytosol | 97.42 | 97.42 |
| TraesCS4A01G229000.1 | Wheat | cytosol, extracellular, plasma membrane | 97.58 | 93.52 |
| HORVU4Hr1G014910.1 | Barley | mitochondrion | 93.24 | 83.31 |
| Os11t0246900-01 | Rice | mitochondrion | 76.01 | 81.94 |
| EES09541 | Sorghum | nucleus | 77.13 | 76.76 |
| Zm00001d049019_P003 | Maize | cytosol | 75.36 | 75.24 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 60.39 | 66.37 |
| GSMUA_Achr6P12560_001 | Banana | cytosol | 57.81 | 66.36 |
| KRH01853 | Soybean | cytosol | 61.03 | 62.64 |
| CDY23417 | Canola | cytosol | 53.78 | 62.43 |
| KRH51312 | Soybean | cytosol | 60.71 | 62.31 |
| GSMUA_Achr3P02760_001 | Banana | cytosol | 62.48 | 62.28 |
| Solyc08g015780.2.1 | Tomato | cytosol | 63.28 | 61.89 |
| AT2G44090.1 | Thale cress | cytosol | 57.65 | 61.51 |
| PGSC0003DMT400035669 | Potato | cytosol | 62.8 | 61.42 |
| PGSC0003DMT400016554 | Potato | cytosol | 62.16 | 61.37 |
| GSMUA_Achr6P18250_001 | Banana | cytosol | 60.71 | 60.81 |
| Solyc12g017540.1.1 | Tomato | cytosol | 61.67 | 60.7 |
| CDY05963 | Canola | cytosol | 58.45 | 60.1 |
| CDX71861 | Canola | cytosol | 58.29 | 59.93 |
| Bra007492.1-P | Field mustard | cytosol | 58.29 | 59.93 |
| CDY17887 | Canola | cytosol | 57.49 | 59.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.97 | 59.5 |
| Bra004804.1-P | Field mustard | cytosol | 57.65 | 58.98 |
| AT3G59910.2 | Thale cress | cytosol | 57.81 | 58.76 |
| CDX79783 | Canola | cytosol | 57.33 | 58.65 |
| VIT_05s0094g01540.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 63.12 | 40.04 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G087400.1 | EnsemblPlantsGene:TraesCS4B01G087400 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PANTHER:PTHR36024 | SEG:seg | SUPFAM:SSF48403 | TIGR:cd00204 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4B:-:87689569..87693171
Molecular Weight (calculated)
67699.8 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.048
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVEGKMNLE IGSKDMEVES KNLKLEDPLP SSAMDMDEPA VAESGEVDGS NGSSKECPLT PRDSMTSNVP VAKEPRSVST DFGDELDLEL GSGEPEPGRQ
101: QERKLSRQDR LELNRLFQHA VSAHDWECAD GLLATADAQG LNDVLCVAVD AIWFLSDKEE LYAIVALIKR IVSAGANDFT RAALRTSFLA SCVSACRGRT
201: TSLADAVSFM GQKLHERLQE SHGDEVLKAE ASAKVHKFTE WALKCIGLHA RVRESRGKGN HGTIIEVQLQ LSAFKTFLDI ADNDLTGKDF TEAFDAACFP
301: LTLFSSTFDQ GWAAGISAAA IQGLLDLLVE GGADNVNQCF LEAARYGSTE LVRILLQIAQ RNSLDIDVDL ALGFAAHYGK LETMGCLVEE GNTVAFLGPL
401: MRAAERGCFQ VVEWFVNRGC RDMELCLALT AATSSSQVEV AAYLLPLVPQ LVLAPLSIEI VKAAGERSTG SLLGVDFLLR SDFLNDPAAT YAVADSIARC
501: ADEAVDAKLR LFMLEQWSEE AFNKGFASSQ EHFVNITRIM QRGESPVVLR QLPLQLVIAM AYLPLYRECV GSGGRLLPQR LRGQLVEAAG RLEGRQVDRG
601: TQQSELLAIL EHHLPRFLVQ T
101: QERKLSRQDR LELNRLFQHA VSAHDWECAD GLLATADAQG LNDVLCVAVD AIWFLSDKEE LYAIVALIKR IVSAGANDFT RAALRTSFLA SCVSACRGRT
201: TSLADAVSFM GQKLHERLQE SHGDEVLKAE ASAKVHKFTE WALKCIGLHA RVRESRGKGN HGTIIEVQLQ LSAFKTFLDI ADNDLTGKDF TEAFDAACFP
301: LTLFSSTFDQ GWAAGISAAA IQGLLDLLVE GGADNVNQCF LEAARYGSTE LVRILLQIAQ RNSLDIDVDL ALGFAAHYGK LETMGCLVEE GNTVAFLGPL
401: MRAAERGCFQ VVEWFVNRGC RDMELCLALT AATSSSQVEV AAYLLPLVPQ LVLAPLSIEI VKAAGERSTG SLLGVDFLLR SDFLNDPAAT YAVADSIARC
501: ADEAVDAKLR LFMLEQWSEE AFNKGFASSQ EHFVNITRIM QRGESPVVLR QLPLQLVIAM AYLPLYRECV GSGGRLLPQR LRGQLVEAAG RLEGRQVDRG
601: TQQSELLAIL EHHLPRFLVQ T
001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH
Arabidopsis Description
AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.