Factsheet for Solyc12g017540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016554	Potato	cytosol	94.93	95.23
Solyc08g015780.2.1	Tomato	cytosol	83.2	82.68
KRH51312	Soybean	cytosol	73.85	77.02
KRH01853	Soybean	cytosol	73.53	76.69
GSMUA_Achr6P12560_001	Banana	cytosol	63.39	73.94
CDY23417	Canola	cytosol	61.81	72.9
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	65.13	72.74
AT2G44090.1	Thale cress	cytosol	66.72	72.34
CDX79783	Canola	cytosol	68.3	71.0
Bra004804.1-P	Field mustard	cytosol	68.15	70.84
CDY17887	Canola	cytosol	67.19	70.78
GSMUA_Achr3P02760_001	Banana	cytosol	69.57	70.47
AT3G59910.2	Thale cress	cytosol	68.15	70.38
CDY05963	Canola	cytosol	66.56	69.54
Bra007492.1-P	Field mustard	cytosol	66.56	69.54
CDX71861	Canola	cytosol	66.56	69.54
Os11t0246900-01	Rice	mitochondrion	60.06	65.8
GSMUA_Achr6P18250_001	Banana	cytosol	64.5	65.65
HORVU5Hr1G007560.1	Barley	cytosol	23.61	64.5
GSMUA_AchrUn_...	Banana	cytosol	61.01	63.64
TraesCS4D01G084700.1	Wheat	cytosol	60.7	61.67
TraesCS4B01G087400.1	Wheat	cytosol	60.7	61.67
EES09541	Sorghum	nucleus	60.38	61.06
Zm00001d049019_P003	Maize	cytosol	59.9	60.77
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	60.7	59.1
Os02t0562400-01	Rice	cytosol, extracellular	44.06	57.92
HORVU4Hr1G014910.1	Barley	mitochondrion	60.38	54.82
KXG30444	Sorghum	cytosol	49.13	52.63
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	77.02	49.64
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	23.93	45.21
Zm00001d016858_P001	Maize	cytosol	48.34	36.18

Protein Annotations

EnsemblPlants:Solyc12g017540.1.1	EnsemblPlantsGene:Solyc12g017540.1	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002769417	UniProt:K4DD86
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6803967..6811123

Molecular Weight (calculated)

68381.6 Da

IEP (calculated)

4.875

GRAVY (calculated)

0.001

Length

631 amino acids

Sequence
(BLAST)

001: MEEDKAVFVG SRNSIISEEK TVFSEMEVET ADMDISDRNN ENVVLPSEEG EGSNGNVVFS REAPLVHKDF RSSAVAGGCS CGVNKIKSGI ANSDSELGKS
101: EESGLEKKLS RQDRIELGRL FQGAVSDHDW ELAESLILLA DPQTLNDALC IGLDSIWFLS NQDELYGITG LIKKIIANGA FDFTRAALRT SFLASCVSAC
201: QSRTMGLADT VTVMARRLHE RLRECSGDEV LKAEAGAKVQ KFTEWALKCI GFHSRCQGKR DTVGKNSAVE IQLQLSAFKT FLDLAGNHLT GKDFTEAFDA
301: ACFPLTLFPS SFDTCWASGI SATAIQGLLG MLVDGGADNV NQCFLEASRF GSTELVRILL QIAQRNSLDV DVELALGFAS HYGKIGTMEC LVEEGNALSF
401: LGPLMRAAER GCMQVVEWFV KRGCRDMELC LALTAATSSS QVEVAAYLLP HVPKHVLAAL SIEILKAAGE RSSGSLDGVA FLLHSDFLSD PVATYAVADS
501: IAKSDDDAVP PGLRSFLREH WSEAAFSDGL RQGQQHYLNF VQIVNYGESP ICLKDLPGPL RVAIAYLPLY RESVKAGRCC LLSQRLRGQL VEAAKRLGGV
601: VLEEANQGKE LVAVLEHHLP PFLLNASSAA Y

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.