Factsheet for Solyc08g015780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035669	Potato	cytosol	97.8	97.8
Solyc12g017540.1.1	Tomato	cytosol	82.68	83.2
KRH01853	Soybean	cytosol	74.02	77.69
KRH51312	Soybean	cytosol	73.86	77.52
GSMUA_Achr6P12560_001	Banana	cytosol	63.15	74.12
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	65.83	73.98
CDY23417	Canola	cytosol	61.89	73.46
AT2G44090.1	Thale cress	cytosol	66.93	73.02
AT3G59910.2	Thale cress	cytosol	70.08	72.83
CDY05963	Canola	cytosol	68.35	71.85
CDX71861	Canola	cytosol	68.35	71.85
Bra007492.1-P	Field mustard	cytosol	68.19	71.69
GSMUA_Achr3P02760_001	Banana	cytosol	69.61	70.95
CDY17887	Canola	cytosol	66.46	70.45
Bra004804.1-P	Field mustard	cytosol	67.09	70.18
CDX79783	Canola	cytosol	67.09	70.18
HORVU5Hr1G007560.1	Barley	cytosol	24.41	67.1
GSMUA_Achr6P18250_001	Banana	cytosol	64.88	66.45
Os11t0246900-01	Rice	mitochondrion	60.16	66.32
GSMUA_AchrUn_...	Banana	cytosol	61.42	64.46
TraesCS4D01G084700.1	Wheat	cytosol	61.89	63.28
TraesCS4B01G087400.1	Wheat	cytosol	61.89	63.28
EES09541	Sorghum	nucleus	60.94	62.02
Zm00001d049019_P003	Maize	cytosol	60.31	61.58
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	62.2	60.96
Os02t0562400-01	Rice	cytosol, extracellular	44.57	58.96
HORVU4Hr1G014910.1	Barley	mitochondrion	62.05	56.69
KXG30444	Sorghum	cytosol	48.66	52.46
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	80.47	52.2
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	24.72	47.01
Zm00001d016858_P001	Maize	cytosol	48.5	36.54

Protein Annotations

EnsemblPlants:Solyc08g015780.2.1	EnsemblPlantsGene:Solyc08g015780.2	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR36024	SUPFAM:SSF48403	UniParc:UPI000276B4B1	UniProt:K4CJA7	MapMan:35.1

Description

No Description!

Coordinates

chr8:-:5597269..5603111

Molecular Weight (calculated)

68947.3 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.026

Length

635 amino acids

Sequence
(BLAST)

001: MEEDGMAFVA GSENLESGIK INAEESQCFE MEVESCETGT LGVSNESVVF PSENGEGSNG NVVFSRESPL VRKDFRSSAV VGGCNCGVNK LKARLSSSDG
101: ENGKNEISGA EKKLNRQERI ELGRLFQGAV SCHDWELAES LILLADPQTL NDALCIALDS VWFLSTQQEL YGITGLIKKI ISNGAFDFTR AALRTSFLAS
201: CVSACQSRTM SLTDTVTVMA RRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGNRDRVRH NPAVEIQLQL SAFKTFLDLA GNHLSGKDFT
301: EAFDAACFPL TLFSSSFDPG WASGISATAI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRILLQIAQR NSLDVDVDLA LGFASHYGKI GTMECLVEEG
401: NAMAFLGPLM RAAERGSMQV VDWFVKRGCR DMELCLALTA ATSSSQVEVA RYLLPHVPQH VLAALSIEIL KAAGERSSGS LDGVAFLLSS DFLGDPIATY
501: AVADSIAKSD DEAVAPALRS FLREHWSEAA FSDGLRQGQE HYCNLLRIMK WGESPVCLRD IPGPLRIAIA YLPLYRECVK AGGCLLSQRL KGQLVEAAKR
601: LDGVVLEEVK QGRELLAVLE HHLPPFLHNN ASNAA

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.