Factsheet for GSMUA_Achr10P16350_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 2
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12560_001	Banana	cytosol	80.71	84.29
GSMUA_Achr3P02760_001	Banana	cytosol	83.19	75.44
GSMUA_Achr6P18250_001	Banana	cytosol	75.58	68.87
KRH51312	Soybean	cytosol	73.63	68.76
KRH01853	Soybean	cytosol	73.27	68.43
CDY23417	Canola	cytosol	64.42	68.04
GSMUA_AchrUn_...	Banana	cytosol	72.39	67.6
HORVU5Hr1G007560.1	Barley	cytosol	27.43	67.1
Os11t0246900-01	Rice	mitochondrion	67.61	66.32
AT2G44090.1	Thale cress	cytosol	68.14	66.15
PGSC0003DMT400016554	Potato	cytosol	73.63	66.14
PGSC0003DMT400035669	Potato	cytosol	74.16	65.98
Solyc08g015780.2.1	Tomato	cytosol	73.98	65.83
Solyc12g017540.1.1	Tomato	cytosol	72.74	65.13
CDX71861	Canola	cytosol	69.03	64.57
CDY05963	Canola	cytosol	68.14	63.74
AT3G59910.2	Thale cress	cytosol	68.85	63.67
Bra007492.1-P	Field mustard	cytosol	67.79	63.41
CDY17887	Canola	cytosol	66.55	62.77
Os02t0562400-01	Rice	cytosol, extracellular	52.74	62.08
CDX79783	Canola	cytosol	66.37	61.78
Bra004804.1-P	Field mustard	cytosol	66.02	61.45
TraesCS4B01G087400.1	Wheat	cytosol	66.37	60.39
Zm00001d049019_P003	Maize	cytosol	66.37	60.29
TraesCS4D01G084700.1	Wheat	cytosol	66.02	60.06
EES09541	Sorghum	nucleus	66.19	59.94
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	66.02	57.56
HORVU4Hr1G014910.1	Barley	mitochondrion	67.08	54.53
KXG30444	Sorghum	cytosol	54.87	52.63
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	27.26	46.11
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	76.99	44.43
Zm00001d016858_P001	Maize	cytosol	55.22	37.01

Protein Annotations

EnsemblPlants:GSMUA_Achr10P16350_001	EnsemblPlants:GSMUA_Achr10T16350_001	EnsemblPlantsGene:GSMUA_Achr10G16350_001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002964BAC
UniProt:M0RIR0	MapMan:35.1	:	:	:	:

Description

F-box/ankyrin repeat protein SKIP35 [Source:GMGC_GENE;Acc:GSMUA_Achr10G16350_001]

Coordinates

chr10:+:23915733..23919788

Molecular Weight (calculated)

61426.4 Da

IEP (calculated)

6.435

GRAVY (calculated)

0.059

Length

565 amino acids

Sequence
(BLAST)

001: MDAGTELPLS LPLPLFPPPP LPPLSVPCLQ GAVSEIQRKD KNKQEKKLSR QERIELGRLF QGAVSSQDLE LAENLILLAD PLTLNDMLCI ALDSIWFLTT
101: RQELNGITGL IKKIVANGAN DFTRAALRTS FLASCVSACQ SKTMSLADTV GIMAHRLHER LQECHGDEVL KAEAGAKVQK FTEWALKCIG VHSRCQENKG
201: RRSHSTILEV QLQLSAFKNF LDLAGNNLTG KDFTEAFDAA CFPLTLFSTS GISATVIQGL LGMLVEGGAD NVNQCFLEAS RFGSTELVRI LLQIAQRNSL
301: DIDVDLALGF ASHYCKIGTM ECLVEEGNAA AFLGPLMRAA ERGCMQVVQW FVDRGCRDME LCLALTAAAS SSQVGIASYL LPHIPQHVLA ALSIEVLKAA
401: GERSSGSLDG VAFLLRNNFL GDPAATYAVA DSIARSSDEA VAPNLRAFLK EHWSEAAYAE GLSYGQNHYV NFMRILRRGG SPICLKDLPP PLVTAIAYLP
501: LYRECQEKGG QLLPQKLRGQ LVEAASRVGG RPVEKNSQAR ELLAILEQHL PTFFLQLPNI GSTLL

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.