Factsheet for Zm00001d016858_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30444	Sorghum	cytosol	65.36	93.55
Os02t0562400-01	Rice	cytosol, extracellular	43.77	76.88
GSMUA_Achr6P12560_001	Banana	cytosol	36.42	56.75
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	37.01	55.22
GSMUA_Achr3P02760_001	Banana	cytosol	38.91	52.65
KRH01853	Soybean	cytosol	36.65	51.07
CDY23417	Canola	cytosol	32.15	50.65
KRH51312	Soybean	cytosol	36.06	50.25
AT2G44090.1	Thale cress	cytosol	34.52	50.0
GSMUA_Achr6P18250_001	Banana	cytosol	36.77	50.0
GSMUA_AchrUn_...	Banana	cytosol	35.59	49.59
CDY17887	Canola	cytosol	34.64	48.75
Solyc08g015780.2.1	Tomato	cytosol	36.54	48.5
PGSC0003DMT400016554	Potato	cytosol	36.18	48.49
AT3G59910.2	Thale cress	cytosol	35.11	48.45
PGSC0003DMT400035669	Potato	cytosol	36.42	48.35
Solyc12g017540.1.1	Tomato	cytosol	36.18	48.34
CDY05963	Canola	cytosol	34.52	48.18
CDX79783	Canola	cytosol	34.64	48.11
CDX71861	Canola	cytosol	34.4	48.01
Bra007492.1-P	Field mustard	cytosol	34.28	47.85
Bra004804.1-P	Field mustard	cytosol	34.4	47.78
Zm00001d049019_P003	Maize	cytosol	33.93	45.98
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	36.42	31.36

Protein Annotations

EnsemblPlants:Zm00001d016858_P001	EnsemblPlants:Zm00001d016858_T001	EnsemblPlantsGene:Zm00001d016858	Gene3D:3.60.10.10	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:Endo/exonu/phosph_ase_sf	InterPro:IPR020683	InterPro:IPR036691	InterPro:IPR036770	ProteinID:AQK71837.1	ProteinID:AQK71844.1
SEG:seg	SUPFAM:SSF48403	SUPFAM:SSF56219	UniParc:UPI000843F8A8	UniProt:A0A1D6HAV7	MapMan:35.1

Description

Ankyrin repeat protein SKIP35

Coordinates

chr5:-:178455640..178465050

Molecular Weight (calculated)

93392.5 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.127

Length

843 amino acids

Sequence
(BLAST)

001: MVEQGKPRSI PTKAKKSPFV EVEVDEIGQA SGVVFARESP LAPKSDQGCS VSHSHGDDET HESDGCVQSQ GLDEHGWVDF GHSLQLVLFS RQWSLAESLV
101: DLADQQPMLD YGLSIALDAI WFLRTKQDLE GLNSLISKIV ASGAKDFARA ILRTSLLASC VAACQSKAIT VGNSKEIVAE RLHDRLRDCP GAEHLKIEAG
201: AKVQKFMEWA LQCIHMHHCS EDTHMYRWNY NTLQEVQLHV SAFRTFLDIA GDNLSGKIFT EAFDAVCFPL TLFSSLFEPG WSSGSSAVSI KGLLSLLVEG
301: GADNVNQCFL EAARFGSTEL VRILLKVGLS ESEKRKFWED LDDMVRAVPT NEKIFIGGDL NGHVGSTNAG YELAHGGFEY GIRNQGEDIL DFVVAYNLVI
401: ANTFFRKRDS HLVTFSSGHR SSQIDFVLTR REDKQTCLEC KVIPGESVVP QHNNLVVVDF RFRIRTHRDK QAKIARAKCW KLKGETSEVF RERVFVEGAW
501: SEEDANNMWV KMATCIRNVA SEVFGVTKGS SGEPKDTLWW TEDVQKAIKE KKQCYRSLFH DRSTVNIERY KVAKKFAKQA VAYQNSLAVD TDLALVYASH
601: YCKFKTMECL VDEGNVSSFL GPLIKAAERG CLQVVHWFVS RGVSDIEMCL ALTTAASSGH FVVASYMLAH IPQQILEALS TQILKAARGQ GSRPLDGVTF
701: LLRSNFLRDA AATYEAADII ATGGTNGELP DLVAFLKEHW SQDAFAEGVS AGEMHFVNVM RVLRRGASPI CLEDLPPEMV LGITYLPLYR ECLSAGGQLL
801: PQRLRGELLE AVHRLGEPVG PESQGKDLVL ALERHMPSFL VGS

Best Arabidopsis Sequence Match ( AT2G44090.1 )
(BLAST)

001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH

Arabidopsis Description

AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.