Factsheet for Zm00001d049019_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G44090.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09541	Sorghum	nucleus	93.25	92.95
HORVU5Hr1G007560.1	Barley	cytosol	30.06	80.95
Os11t0246900-01	Rice	mitochondrion	74.92	80.9
TraesCS4D01G084700.1	Wheat	cytosol	75.4	75.52
TraesCS4B01G087400.1	Wheat	cytosol	75.24	75.36
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	75.24	72.22
HORVU4Hr1G014910.1	Barley	mitochondrion	76.37	68.35
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	60.29	66.37
GSMUA_Achr6P12560_001	Banana	cytosol	56.75	65.25
CDY23417	Canola	cytosol	53.54	62.24
AT2G44090.1	Thale cress	cytosol	57.56	61.51
GSMUA_Achr3P02760_001	Banana	cytosol	61.41	61.32
PGSC0003DMT400016554	Potato	cytosol	61.25	60.57
Solyc08g015780.2.1	Tomato	cytosol	61.58	60.31
KRH01853	Soybean	cytosol	58.52	60.17
KRH51312	Soybean	cytosol	58.52	60.17
CDY17887	Canola	cytosol	57.88	60.1
PGSC0003DMT400035669	Potato	cytosol	61.25	60.0
Solyc12g017540.1.1	Tomato	cytosol	60.77	59.9
GSMUA_Achr6P18250_001	Banana	cytosol	59.65	59.84
GSMUA_AchrUn_...	Banana	cytosol	57.88	59.5
Bra004804.1-P	Field mustard	cytosol	57.72	59.14
CDX79783	Canola	cytosol	57.56	58.98
CDY05963	Canola	cytosol	56.91	58.61
CDX71861	Canola	cytosol	56.91	58.61
Bra007492.1-P	Field mustard	cytosol	56.91	58.61
AT3G59910.2	Thale cress	cytosol	57.4	58.43
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	29.74	55.39
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	61.74	39.22
Zm00001d016858_P001	Maize	cytosol	45.98	33.93

Protein Annotations

EnsemblPlants:Zm00001d049019_P003	EnsemblPlants:Zm00001d049019_T003	EnsemblPlantsGene:Zm00001d049019	EntrezGene:100383189	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	ProteinID:AQK49372.1	ProteinID:AQK49373.1
ProteinID:AQK49376.1	SEG:seg	SUPFAM:SSF48403	UniParc:UPI000843A905	UniProt:A0A1D6PRM3	MapMan:35.1

Description

Ankyrin repeat protein SKIP35

Coordinates

chr4:+:12795776..12800287

Molecular Weight (calculated)

68253.3 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.165

Length

622 amino acids

Sequence
(BLAST)

001: MEVDRKKNLQ KIGSKGKEVQ SKNPRREEPL ASSEVDMDEP DAPESGDMIV DGNNGSSRES PLQPMDSKNS KGCAVKKPTS VSSDFGEELD LDLGGEKSGT
101: QQERKLSRQD RVELCRSFQL AVSSHDWESA EGLVGMADAQ GLNDVLCVAV DAIWFLSDRD ELLAIVGLIK RVVSEGAKDF TRAALRTSFL ASCVSACRGR
201: STSLADAVSF MGQKLHERLQ ESQGDEVLKA EASAKVHRFT EWALKCIGLH SRVRENRGKG NHDTVIEVQL QLSAFKIFLD LADNELTGKD FTEAFDAACF
301: PLTLFSTTFD QGWASGISAA AVQGLLELLV EGGADNVNQC FLEAARYGST ELVRILLQVA QRNSLDIDVD LALGFAAHYG KIETMGCLVE EGNAIGFLGP
401: LMRAAERGCL QVVEWFVNHG CREMELCLAL TAATSNSQIA VAAYLLPLVP QHVLAPLSIE IIKAAGERTT GSLQGVDFLL RSDFLNDPAA TYAVADSIAR
501: CTDEAVDAKL RSFMNEHWSE AAFCAGFESA QQHFVNFMRI MERGESPIRL GDLPLELVIA MAYLPLYKEC MNSNGRLLPQ RLRGQLVEAA SRLEDRQVER
601: DSQSRELLAI LEHHIPRFMI QT

Best Arabidopsis Sequence Match ( AT2G44090.1 )
(BLAST)

001: MENDDMYPDE PVGSDLEPQE SDVVFARESP LVGIITQPTK CSGSTAKILK CRGLEQQKKL NRQDRIELGR LFQGAVSSQD WQLSERFIQL ADPQTLNDLL
101: CISLDSIWFL STEHELRGIT ELIAKIICHG AQDYTRATLR TSFLASCVSS CHSRTVSLAD TVTVMAQRLH ERLQECNGDE VLKAEAGAKV QKFTEWALKC
201: IGFHSRCQGP RDKANQDSAA EIQLQLSAFK MFLDLAGNHL SGKDFTEAFD AACFPLTLFS TSFNPGWASG ISATVIHGLL GMLVEGGADN VNQCFLEASR
301: FGSTELVRIL LQIAQRNSLD VDVDLALGFA SHYSKIETMD CLVEEGHAIA FLGPLMRAAE RGCMQVVQWF VKRGCREMEL CLALTAATSS SQVEVAAYLL
401: PHVPRPVLTA LSIEILKAAG ERSGGSLHGV EFLLKSDFLG DPAATYSVAD TIAKSEDESV PSDLKSFLQE QWSEAAFNQG LKESRENYMN FMRVLKLGES
501: AISLKDLPAP LRVAIAYMPL YRECVDAGGR LLSQKLRGQL VEAATQLEGF DVDTEEVKKG HHQLMTILEH HLPLFLVKAS LH

Arabidopsis Description

AT2G44090 protein [Source:UniProtKB/TrEMBL;Acc:O80579]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.