Factsheet for Bra007492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05963	Canola	cytosol	99.01	99.01
AT3G59910.2	Thale cress	cytosol	88.74	87.72
Bra004804.1-P	Field mustard	cytosol	73.18	72.82
GSMUA_Achr6P12560_001	Banana	cytosol	63.91	71.35
KRH51312	Soybean	cytosol	68.54	68.43
Solyc08g015780.2.1	Tomato	cytosol	71.69	68.19
PGSC0003DMT400035669	Potato	cytosol	71.52	68.03
KRH01853	Soybean	cytosol	68.05	67.93
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	63.41	67.79
PGSC0003DMT400016554	Potato	cytosol	70.2	67.41
Solyc12g017540.1.1	Tomato	cytosol	69.54	66.56
GSMUA_Achr3P02760_001	Banana	cytosol	67.55	65.49
Os11t0246900-01	Rice	mitochondrion	59.93	62.85
HORVU5Hr1G007560.1	Barley	cytosol	23.51	61.47
GSMUA_Achr6P18250_001	Banana	cytosol	62.91	61.29
GSMUA_AchrUn_...	Banana	cytosol	60.93	60.83
TraesCS4B01G087400.1	Wheat	cytosol	59.93	58.29
TraesCS4D01G084700.1	Wheat	cytosol	59.6	57.97
Os02t0562400-01	Rice	cytosol, extracellular	46.03	57.92
Zm00001d049019_P003	Maize	cytosol	58.61	56.91
EES09541	Sorghum	nucleus	58.77	56.89
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	59.44	55.4
HORVU4Hr1G014910.1	Barley	mitochondrion	59.6	51.8
KXG30444	Sorghum	cytosol	48.51	49.75
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	25.5	46.11
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	72.85	44.94
Zm00001d016858_P001	Maize	cytosol	47.85	34.28

Protein Annotations

EnsemblPlants:Bra007492.1	EnsemblPlants:Bra007492.1-P	EnsemblPlantsGene:Bra007492	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PANTHER:PTHR36024	SEG:seg	SUPFAM:SSF48403	UniParc:UPI0002542F4B
UniProt:M4CTE9	MapMan:35.1	:	:	:	:

Description

AT3G59910 (E=1e-297) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44090.2); Has 43 Blast hits to 43 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

Coordinates

chrA09:-:29473780..29476444

Molecular Weight (calculated)

66346.2 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.071

Length

604 amino acids

Sequence
(BLAST)

001: MEKEAVFDDI KLSDDEIYYP DEPYCSEKNE EGEGASNVVF SREAPLIGKD PAGTNSNECC GCSAKKLNFK GSEDLIDKEN NSPQKKLSRQ ERIELGRVFQ
101: GAVTSMDWEH AERLIQLADP QTLNDLLCVG LDSVWFLTTK HEFQGVTGLI KEIVCHGAHD FTRATLRTSF LASCVSACHS RTMSLADSVT VMAQSLQERL
201: QECNGDEILK AEAGAKVQKF TEWALKCIGF HSRCQGARDR VSHSSATEIE LQLSAFKMFL ELAGNHLSGR DFTEAFDAAC FPLTLFSNSF DPGWASGISA
301: TVIQGLLGML VEGGADNVNQ CFLEASRFGS TELVRVLLHI AQRNSLDVDV DLALGFASHY CKLGTMKCLV EEGNAIAFLG PLMRAAERGC MQVVQWFVKR
401: GCRDMELCLA LTAATSSSQV EVAAYLLPFV PSPVLTALSI EILKAAGERS GGSLQGVEFL LKSDFLGDPT ATYSVADSIA KSSEDETVPS DLKSFLREHW
501: SESAFEKGMR ESHENFINFM RVLKRGECAI SLRDLPAPLR VAIAYMPLYR ECVNAGGRLL SQRLRGQLVE AVRQLQGCDV PVVEVSETPH LMAVLEHHLT
601: AIFC

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.