Factsheet for GSMUA_AchrUn_randomP20880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44090.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G44090.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18250_001	Banana	cytosol	77.19	75.32
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	67.6	72.39
GSMUA_Achr6P12560_001	Banana	cytosol	64.46	72.09
GSMUA_Achr3P02760_001	Banana	cytosol	70.58	68.54
HORVU5Hr1G007560.1	Barley	cytosol	24.96	65.37
CDY23417	Canola	cytosol	56.03	63.36
KRH01853	Soybean	cytosol	63.14	63.14
Os11t0246900-01	Rice	mitochondrion	59.83	62.85
KRH51312	Soybean	cytosol	62.15	62.15
PGSC0003DMT400016554	Potato	cytosol	64.13	61.69
PGSC0003DMT400035669	Potato	cytosol	64.46	61.42
Solyc08g015780.2.1	Tomato	cytosol	64.46	61.42
AT2G44090.1	Thale cress	cytosol	59.01	61.34
CDX71861	Canola	cytosol	61.16	61.26
CDY05963	Canola	cytosol	60.99	61.09
Solyc12g017540.1.1	Tomato	cytosol	63.64	61.01
Bra007492.1-P	Field mustard	cytosol	60.83	60.93
AT3G59910.2	Thale cress	cytosol	61.32	60.72
CDY17887	Canola	cytosol	59.17	59.77
CDX79783	Canola	cytosol	59.5	59.31
Os02t0562400-01	Rice	cytosol, extracellular	46.94	59.17
Bra004804.1-P	Field mustard	cytosol	59.01	58.81
TraesCS4B01G087400.1	Wheat	cytosol	59.5	57.97
TraesCS4D01G084700.1	Wheat	cytosol	59.5	57.97
Zm00001d049019_P003	Maize	cytosol	59.5	57.88
EES09541	Sorghum	nucleus	59.67	57.85
TraesCS4A01G229000.1	Wheat	cytosol, extracellular, plasma membrane	59.34	55.4
HORVU4Hr1G014910.1	Barley	mitochondrion	60.33	52.52
KXG30444	Sorghum	cytosol	49.26	50.59
HORVU3Hr1G051770.2	Barley	cytosol, mitochondrion	25.12	45.51
VIT_05s0094g01540.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	67.6	41.78
Zm00001d016858_P001	Maize	cytosol	49.59	35.59

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP20880_001	EnsemblPlants:GSMUA_AchrUn_randomT20880_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG20880_001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR036770
PANTHER:PTHR36024	SUPFAM:SSF48403	UniParc:UPI000296CF96	UniProt:M0UAZ6	MapMan:35.1	:

Description

F-box/ankyrin repeat protein SKIP35 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20880_001]

Coordinates

chrchrUn_random:+:101181028..101184190

Molecular Weight (calculated)

66632.9 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.085

Length

605 amino acids

Sequence
(BLAST)

001: MTPEDCMCLV KERQPEKEVD ENGGLGPAHD GDEGERVDGS NHLFLREAPI LTEESGISKD YNCQDKKVGS REELVLRKDM CKQGTKLSRR DRVELGCRFQ
101: RAVSSCDWEL AWNLLVLAKA QALNDVLCVA LDSVWFLTTH EELDGITGLI KKIIGDGAND FTRAILRTSF LASCVSACQS KMMNLTDAVG VTTQRLHERL
201: QECQGDEVLK VEASTKVQKF TEWALKCIRF HSHYQENRGR RRRNQSTIVE VQLQLSAFKT FLELAGDHLT GKDFTEAFDA ACFPVALFSS SFDPGWASGI
301: SAIAVQGLLG MLVEGGADNV NQCFLEASRF GSTELVRILL QIAQRNSLDI DVDLALVFAS HYCKIRTMEC LVEEGNAANL LGPLVRASER GCMQVVQWFV
401: NQGCGDMDLC LALIAATSSS HLGVSAYLLS QIPHHVLAAV SIEILKTVSE RSRGSLDGVA FLLCNDFLGD PTATYAVADS IASSNDEVVA PELRAFLKEH
501: WSEDAFAEGL SSGQDHYVNF MRILQRGGSP ICLMDLPPPL VTAIVYKPLY RECTEAGGKL LPQKLRGKLV EAASRLGGRQ VDNDSPAKEL LAILEHHLPR
601: HFLPL

Best Arabidopsis Sequence Match ( AT3G59910.2 )
(BLAST)

001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D

Arabidopsis Description

SKIP35Ankyrin repeat protein SKIP35 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.