Factsheet for VIT_03s0038g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02500.t01	Wine grape	cytosol	30.14	85.16
VIT_03s0038g02490.t01	Wine grape	mitochondrion	23.06	66.89
VIT_18s0001g14860.t01	Wine grape	cytosol, mitochondrion	29.22	64.97
VIT_19s0085g00180.t01	Wine grape	cytosol	16.89	48.68
VIT_10s0003g05820.t01	Wine grape	cytosol	17.12	46.3
VIT_15s0045g00490.t01	Wine grape	cytosol	15.75	45.7
VIT_19s0085g00190.t01	Wine grape	cytosol	15.75	43.95
VIT_00s0349g00030.t01	Wine grape	cytosol	18.04	3.1

Protein Annotations

EntrezGene:100257179	wikigene:100257179	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	ProteinID:CCB60616	ProteinID:CCB60616.1
UniProt:F6I100	EMBL:FN596508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	EntrezGene:LOC100257179	wikigene:LOC100257179	PFAM:PF01466	PFAM:PF03931
PANTHER:PTHR11165	PANTHER:PTHR11165:SF88	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0001982E10	ArrayExpress:VIT_03s0038g02480
EnsemblPlantsGene:VIT_03s0038g02480	EnsemblPlants:VIT_03s0038g02480.t01	unigene:Vvi.25526	RefSeq:XP_002277864	RefSeq:XP_002277864.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:1727220..1732864

Molecular Weight (calculated)

49888.5 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.209

Length

438 amino acids

Sequence
(BLAST)

001: MASSKTIILR SSEGEDFGLH VVAAMELLVI KPIIEEGNTK RAIPLPNVTS KILAKVIEYC KKHVETPKAE EHAVNDELKG WAADFFKDDR ATFFDLIKAA
101: DYLHIKCLLD LACQTVVDMT KEMSPAEICE IYVSIKEKSL EKIFERYNIK TGLTLKSSDS ETFDLDVAVA TESRKIKRKI KRMIKDRRAN NAILDLNVTS
201: KILATVIEYC KKHAVNDKLE DFVKVDRTTL LDLIKAANYL GIKSLLDLTC QTVADMIKEM SGNENCEIHL LIKERSLEKI CKIYNIKTKL TLQSSDGMFF
301: YVDVAVAMES QTIKHMIEDR CADNAIPLPN VTSKILARVI EYCKKHVETP KAEEHAVNDE LRAWDADFVK VDQATLFDLI LAANYLDIKS LLDLTCQTVA
401: DMIKGKTPSE IRKTFIYKND FTPEEEEEVR RENQWAFE

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.