Factsheet for VIT_16s0050g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35221	Soybean	cytosol	59.2	61.89
PGSC0003DMT400051396	Potato	nucleus	48.16	49.48
Solyc03g007750.2.1	Tomato	nucleus	47.49	48.46
KRG91603	Soybean	cytosol	43.48	44.83
AT5G52880.1	Thale cress	cytosol	38.8	43.12
GSMUA_Achr1P05030_001	Banana	cytosol	41.47	41.33
Bra003105.1-P	Field mustard	nucleus	38.46	40.64
Zm00001d038769_P003	Maize	cytosol	40.13	40.13
KXG22385	Sorghum	cytosol	39.8	39.8
Bra003103.1-P	Field mustard	cytosol	37.46	38.49
Os05t0526300-02	Rice	cytosol	38.8	37.66
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.45	35.86
TraesCS1D01G349500.1	Wheat	cytosol	37.12	35.81
HORVU1Hr1G081990.4	Barley	cytosol	36.79	35.48
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.45	35.16

Protein Annotations

EntrezGene:100257844	wikigene:100257844	MapMan:19.2.2.8.1.4.6	EMBL:AM488321	ProteinID:CAN77760	ProteinID:CAN77760.1
ProteinID:CBI22607	ProteinID:CBI22607.3	UniProt:E0CUQ7	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN595243
GO:GO:0000151	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR001810	EntrezGene:LOC100257844	wikigene:LOC100257844	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0001BE204B	ArrayExpress:VIT_16s0050g01810
EnsemblPlantsGene:VIT_16s0050g01810	EnsemblPlants:VIT_16s0050g01810.t01	RefSeq:XP_002275544	RefSeq:XP_002275544.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:18744196..18747769

Molecular Weight (calculated)

34053.9 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.487

Length

299 amino acids

Sequence
(BLAST)

001: MSTPLERYQK LGLRDSLPRI YQYPFVCKEL SFILRGAYNK LPKNLQSLVF QDTLAAFRLL PQMQTQSAVS AANLLLQSAE AVLPKQKRTQ AVTEFKHAKV
101: ACKRRSKARQ EEEGLAHLPQ DVLVHIFSFL DMQSLLSVGL ACWSWNSAAS DNCLWQLQYA ICFGNSEDIS KMKGRRDGEL VEDKEETKLK EDIATRTGVD
201: WRDAFKRKYK GKRAKRFTSN RGYCGVCHTI VWLSNMKCPK RHPGVKSENQ QIKPVSPQQI VEYILDDSLS MTSSSDSDSD SEGGLLSKLW TYPRYIGID

Best Arabidopsis Sequence Match ( AT5G52880.1 )
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Arabidopsis Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.