Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G360600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 96.05 | 94.19 |
| TraesCS1D01G349500.1 | Wheat | cytosol | 95.72 | 93.87 |
| HORVU1Hr1G081990.4 | Barley | cytosol | 88.16 | 86.45 |
| Zm00001d038769_P003 | Maize | cytosol | 63.82 | 64.88 |
| Os05t0526300-02 | Rice | cytosol | 65.46 | 64.61 |
| KXG22385 | Sorghum | cytosol | 63.16 | 64.21 |
| GSMUA_Achr1P05030_001 | Banana | cytosol | 37.5 | 38.0 |
| AT5G52880.1 | Thale cress | cytosol | 33.22 | 37.55 |
| Bra003105.1-P | Field mustard | nucleus | 34.21 | 36.75 |
| KRH35221 | Soybean | cytosol | 34.54 | 36.71 |
| VIT_16s0050g01810.t01 | Wine grape | cytosol | 35.86 | 36.45 |
| PGSC0003DMT400051396 | Potato | nucleus | 34.21 | 35.74 |
| Solyc03g007750.2.1 | Tomato | nucleus | 34.21 | 35.49 |
| Bra003103.1-P | Field mustard | cytosol | 31.25 | 32.65 |
| KRG91603 | Soybean | cytosol | 28.29 | 29.66 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G346700.1 | EnsemblPlantsGene:TraesCS1A01G346700 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR20995 | PANTHER:PTHR20995:SF27 | PFAM:PF12937 |
| PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : |
Description
No Description!
Coordinates
chr1A:+:533143020..533146082
Molecular Weight (calculated)
33963.5 Da
IEP (calculated)
9.211
GRAVY (calculated)
-0.315
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVRRRAPRP QDTGVVKRYA EMGIAAALSR PWDYPTACRE LAELLRHGYA GLPKPAQALA AADVLVAFRL LPDVQTEYAL AAANGLLLAV ETSLPKQKKS
101: QAVSEFKCSV VLHKRRAKVQ QEPDPPDIPN DVLVHIFSFL DTRSLVAASL VCWSWNSSAN DNKLWRMNYS LFFSTSHLRS NSTLVSSGVL AQNNVDPVFD
201: DPNLNWKEVF YKKHAEHISW SAASNRAICQ QCRSVLWLSN LTRAAPHHCP KKGKDEIKLM PLLPYAVACY ILKAQDQPSS SSDSNDSDSD SEINVPRRLW
301: NSRV
101: QAVSEFKCSV VLHKRRAKVQ QEPDPPDIPN DVLVHIFSFL DTRSLVAASL VCWSWNSSAN DNKLWRMNYS LFFSTSHLRS NSTLVSSGVL AQNNVDPVFD
201: DPNLNWKEVF YKKHAEHISW SAASNRAICQ QCRSVLWLSN LTRAAPHHCP KKGKDEIKLM PLLPYAVACY ILKAQDQPSS SSDSNDSDSD SEINVPRRLW
301: NSRV
001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
Arabidopsis Description
F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.