Factsheet for AT5G52880.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003105.1-P	Field mustard	nucleus	68.4	65.02
Bra003103.1-P	Field mustard	cytosol	62.45	57.73
KRH35221	Soybean	cytosol	43.87	41.26
VIT_16s0050g01810.t01	Wine grape	cytosol	43.12	38.8
PGSC0003DMT400051396	Potato	nucleus	40.15	37.11
Solyc03g007750.2.1	Tomato	nucleus	40.15	36.86
KXG22385	Sorghum	cytosol	38.29	34.45
KRG91603	Soybean	cytosol	36.8	34.14
Zm00001d038769_P003	Maize	cytosol	37.92	34.11
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.55	33.22
Os05t0526300-02	Rice	cytosol	37.55	32.79
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.55	32.58
TraesCS1D01G349500.1	Wheat	cytosol	37.17	32.26
HORVU1Hr1G081990.4	Barley	cytosol	36.8	31.94
GSMUA_Achr1P05030_001	Banana	cytosol	34.94	31.33

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:835365	ProteinID:AED96271.1	ArrayExpress:AT5G52880	EnsemblPlantsGene:AT5G52880
RefSeq:AT5G52880	TAIR:AT5G52880	RefSeq:AT5G52880-TAIR-G	EnsemblPlants:AT5G52880.1	TAIR:AT5G52880.1	EMBL:AY054282
EMBL:AY132006	ProteinID:BAB10436.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000151	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR001810
RefSeq:NP_568779.1	PFAM:PF12937	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	UniProt:Q9FLX3
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00000A709A	SEG:seg	:	:

Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]

Coordinates

chr5:-:21431778..21433794

Molecular Weight (calculated)

30705.6 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.322

Length

269 amino acids

Sequence
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.