CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35221	Soybean	cytosol	62.41	63.29
VIT_16s0050g01810.t01	Wine grape	cytosol	44.83	43.48
Solyc03g007750.2.1	Tomato	nucleus	37.59	37.2
AT5G52880.1	Thale cress	cytosol	34.14	36.8
PGSC0003DMT400051396	Potato	nucleus	36.9	36.77
GSMUA_Achr1P05030_001	Banana	cytosol	37.24	36.0
KXG22385	Sorghum	cytosol	34.14	33.11
Zm00001d038769_P003	Maize	cytosol	34.14	33.11
Bra003105.1-P	Field mustard	nucleus	30.0	30.74
Os05t0526300-02	Rice	cytosol	32.07	30.19
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.66	28.29
TraesCS1D01G349500.1	Wheat	cytosol	30.0	28.06
Bra003103.1-P	Field mustard	cytosol	27.93	27.84
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.97	27.1
HORVU1Hr1G081990.4	Barley	cytosol	28.62	26.77

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	UniProt:A0A0R0ENH2	EMBL:ACUP02012692	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_20G163800	GO:GO:0000151	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:IPR001810	EnsemblPlants:KRG91603	ProteinID:KRG91603	ProteinID:KRG91603.1
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0006EDA75B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:40128888..40133417

Molecular Weight (calculated)

32582.0 Da

IEP (calculated)

7.846

GRAVY (calculated)

-0.180

Length

290 amino acids

Sequence
(BLAST)

001: MNVDQLISDS DSNPTYAVEY PIACRELSFI LREAFHQFPK NLQSIVFQDT LSAFRLLPQH GHVDTCNVQN IEHSTGVVSV SNTDTDACRI PDTPTIQTQS
101: AVSAVHSLLQ SVEAALPKQK KNVAVTKFKH AMVVHKRRCS LQLPQDILAH IFSFLEMKSL VSMGLVCWSW NIAANDNHLW EKQYVALYGN RAKPKPAKLI
201: EGKNDGLLLE PVDTRIITDW KESVKGAYTF DFDIGALARI LTTNRGYCGH YKSVVWLNNA KCPNAHFGIS EIQDIRPVTA FQMNTNIKIE

Best Arabidopsis Sequence Match ( AT5G52880.1 )
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Arabidopsis Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.