Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22385 | Sorghum | cytosol | 44.0 | 44.15 |
| Zm00001d038769_P003 | Maize | cytosol | 44.0 | 44.15 |
| KRH35221 | Soybean | cytosol | 41.0 | 43.01 |
| VIT_16s0050g01810.t01 | Wine grape | cytosol | 41.33 | 41.47 |
| Os05t0526300-02 | Rice | cytosol | 42.33 | 41.23 |
| PGSC0003DMT400051396 | Potato | nucleus | 36.67 | 37.8 |
| TraesCS1A01G346700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 38.0 | 37.5 |
| KRG91603 | Soybean | cytosol | 36.0 | 37.24 |
| TraesCS1D01G349500.1 | Wheat | cytosol | 38.33 | 37.1 |
| Solyc03g007750.2.1 | Tomato | nucleus | 36.0 | 36.86 |
| HORVU1Hr1G081990.4 | Barley | cytosol | 37.67 | 36.45 |
| TraesCS1B01G360600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.67 | 36.45 |
| AT5G52880.1 | Thale cress | cytosol | 31.33 | 34.94 |
| Bra003105.1-P | Field mustard | nucleus | 32.33 | 34.28 |
| Bra003103.1-P | Field mustard | cytosol | 29.67 | 30.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P05030_001 | EnsemblPlants:GSMUA_Achr1T05030_001 | EnsemblPlantsGene:GSMUA_Achr1G05030_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR20995 | PANTHER:PTHR20995:SF27 | PFAM:PF12937 |
| PFscan:PS50181 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0002963ACC | UniProt:M0RX61 | MapMan:19.2.2.8.1.4.6 |
Description
Putative F-box protein At5g52880 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05030_001]
Coordinates
chr1:-:4163111..4170914
Molecular Weight (calculated)
33310.3 Da
IEP (calculated)
9.162
GRAVY (calculated)
-0.029
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRATVRERY EKLGLAEALS RAHDYPSACH ELGLILRLAY ADLPKNLQSV VFQETLSAFR LLPEGPIIVY TVHSNPSLSK HFHLALLVNT YRVQTGHGLS
101: SANVLLQAAE VALPKQKKAL AVSEFKHAAV AHKRRSRAHH DGGSVVLPYD LLVHIFSFLD LRSLASVGLV CWAWNTAAID NGLWQMLYSN LFGNYSTCTS
201: KEQDHKLVPD GKDVVFHGCM GVDPTININW KEAVRRKCEG VSSWKFLPNR VVCGHCQSII WSSGITCRTS HECSKIGNQK LNIRPISPCK VSVCFLPSQL
101: SANVLLQAAE VALPKQKKAL AVSEFKHAAV AHKRRSRAHH DGGSVVLPYD LLVHIFSFLD LRSLASVGLV CWAWNTAAID NGLWQMLYSN LFGNYSTCTS
201: KEQDHKLVPD GKDVVFHGCM GVDPTININW KEAVRRKCEG VSSWKFLPNR VVCGHCQSII WSSGITCRTS HECSKIGNQK LNIRPISPCK VSVCFLPSQL
001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
Arabidopsis Description
F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.