CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91603	Soybean	cytosol	63.29	62.41
VIT_16s0050g01810.t01	Wine grape	cytosol	61.89	59.2
Solyc03g007750.2.1	Tomato	nucleus	50.7	49.49
PGSC0003DMT400051396	Potato	nucleus	50.0	49.14
AT5G52880.1	Thale cress	cytosol	41.26	43.87
GSMUA_Achr1P05030_001	Banana	cytosol	43.01	41.0
Bra003105.1-P	Field mustard	nucleus	40.56	40.99
Zm00001d038769_P003	Maize	cytosol	41.26	39.46
KXG22385	Sorghum	cytosol	40.56	38.8
Bra003103.1-P	Field mustard	cytosol	37.41	36.77
Os05t0526300-02	Rice	cytosol	39.51	36.69
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.71	34.54
TraesCS1D01G349500.1	Wheat	cytosol	37.41	34.52
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.36	33.55
HORVU1Hr1G081990.4	Barley	cytosol	35.66	32.9

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02006659	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G229500
GO:GO:0000151	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	UniProt:I1LDK5	InterPro:IPR001810	EnsemblPlants:KRH35221	ProteinID:KRH35221	ProteinID:KRH35221.1
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI00023CE383	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:45961076..45964619

Molecular Weight (calculated)

32162.8 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.163

Length

286 amino acids

Sequence
(BLAST)

001: MTNPLERYQK LGLSESLPKT YRYPIACREL SFILREAFHQ FPKNLQSIVF QDTLSAFRLL PEIQTQSAVS AVHFLLQSVE AALPKQKKNV AVTEFKHAMV
101: AHKRRCKAHQ VEKGSLPLPQ DILVLIFSFL DMKSLVSVGL VCRSWNIAAN DNHLWEMQYV ALFGGRAKLV EGKNNRLLLE PIDTRIITDW KEAVKGAYTG
201: ALSRILTTSR GYCGHCKSVV WLNNSKCPNV HSGISEIQDI KPVTAFQAVE YVLEDSLSVT SSSDSDSDSE GGTVSRLWAY PKHIRK

Best Arabidopsis Sequence Match ( AT5G52880.1 )
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Arabidopsis Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.