Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G360600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 96.45 | 96.45 |
| TraesCS1A01G346700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 93.87 | 95.72 |
| HORVU1Hr1G081990.4 | Barley | cytosol | 88.39 | 88.39 |
| Zm00001d038769_P003 | Maize | cytosol | 64.19 | 66.56 |
| Os05t0526300-02 | Rice | cytosol | 65.81 | 66.23 |
| KXG22385 | Sorghum | cytosol | 63.55 | 65.89 |
| GSMUA_Achr1P05030_001 | Banana | cytosol | 37.1 | 38.33 |
| KRH35221 | Soybean | cytosol | 34.52 | 37.41 |
| AT5G52880.1 | Thale cress | cytosol | 32.26 | 37.17 |
| VIT_16s0050g01810.t01 | Wine grape | cytosol | 35.81 | 37.12 |
| Bra003105.1-P | Field mustard | nucleus | 33.23 | 36.4 |
| PGSC0003DMT400051396 | Potato | nucleus | 33.55 | 35.74 |
| Solyc03g007750.2.1 | Tomato | nucleus | 33.55 | 35.49 |
| Bra003103.1-P | Field mustard | cytosol | 30.65 | 32.65 |
| KRG91603 | Soybean | cytosol | 28.06 | 30.0 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G349500.1 | EnsemblPlantsGene:TraesCS1D01G349500 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR20995 | PANTHER:PTHR20995:SF27 | PFAM:PF12937 |
| PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : |
Description
No Description!
Coordinates
chr1D:+:435751819..435754856
Molecular Weight (calculated)
34428.0 Da
IEP (calculated)
9.267
GRAVY (calculated)
-0.295
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVRRRAPRP QDTGVVKRYA EMGIAAALSR PWDYPTACRE LAELLRHGYA GLPKAAQALA AADVLVAFRL LPDVQTEYAL AAANGLLLAV ETSLPKQKKS
101: QAVSEFKCSV ILHKRRAKVQ QEPATPDIPN DVLVHIFSFL DTRSLVAAGL VCWSWNSSAN DNKLWRMNYS LFFSTSHLRS SSTLVSSGVQ NSHGILAQNN
201: VDPVFDDPNL NWKEVFHKKH AEHISWSAAS NRAICRQCRS VLWLSNLTCA APHHCPKKGK DEIKLMPLLP YAVACYILNA QDRPSSSSDS SDSDSDSENN
301: VPRRLWNSRV
101: QAVSEFKCSV ILHKRRAKVQ QEPATPDIPN DVLVHIFSFL DTRSLVAAGL VCWSWNSSAN DNKLWRMNYS LFFSTSHLRS SSTLVSSGVQ NSHGILAQNN
201: VDPVFDDPNL NWKEVFHKKH AEHISWSAAS NRAICRQCRS VLWLSNLTCA APHHCPKKGK DEIKLMPLLP YAVACYILNA QDRPSSSSDS SDSDSDSENN
301: VPRRLWNSRV
001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
Arabidopsis Description
F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.