Factsheet for PGSC0003DMT400051396

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007750.2.1	Tomato	nucleus	92.44	91.81
KRH35221	Soybean	cytosol	49.14	50.0
VIT_16s0050g01810.t01	Wine grape	cytosol	49.48	48.16
AT5G52880.1	Thale cress	cytosol	37.11	40.15
Bra003105.1-P	Field mustard	nucleus	38.14	39.22
Bra003103.1-P	Field mustard	cytosol	37.8	37.8
KRG91603	Soybean	cytosol	36.77	36.9
GSMUA_Achr1P05030_001	Banana	cytosol	37.8	36.67
Zm00001d038769_P003	Maize	cytosol	36.77	35.79
KXG22385	Sorghum	cytosol	36.08	35.12
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	35.74	34.21
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.08	33.87
HORVU1Hr1G081990.4	Barley	cytosol	35.74	33.55
TraesCS1D01G349500.1	Wheat	cytosol	35.74	33.55
Os05t0526300-02	Rice	cytosol	35.05	33.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400051396	EnsemblPlantsGene:PGSC0003DMG400019962	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	PFAM:PF12937
PFscan:PS50181	PGSC:PGSC0003DMG400019962	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000294E788
UniProt:M1BRP1	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019962]

Coordinates

chr3:+:49325166..49331996

Molecular Weight (calculated)

32676.7 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.358

Length

291 amino acids

Sequence
(BLAST)

001: MERYQKLGLK ESLNQPYRYP IACDELSLIL RNAYSRIPKN LQSLIFQDSL AAFGLLPEMQ TQAAISAAHG LLQSMEAALP KQKKALAASE FKQAMVTHRR
101: RRKVRPVLEG RSQLPEDVLV HVFGFLDLKS LVTASSVCRS WSVAASDNHL WQSIHISFFG KSSDIPNIIR FTNGVERISF TPGNTAADNV DWKDAFKRGY
201: RGISNKVSSQ RGFCKQCNSI VWLSNSKCSN EYDGKISDEH QIMPVSLEQI VDYVIEESIP SSDSDSDSDD SVDGSVFKLW AYPRRVSEPH A

Best Arabidopsis Sequence Match ( AT5G52880.1 )
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Arabidopsis Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.