Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003105.1-P | Field mustard | nucleus | 69.07 | 71.02 |
| AT5G52880.1 | Thale cress | cytosol | 57.73 | 62.45 |
| PGSC0003DMT400051396 | Potato | nucleus | 37.8 | 37.8 |
| Solyc03g007750.2.1 | Tomato | nucleus | 37.8 | 37.54 |
| VIT_16s0050g01810.t01 | Wine grape | cytosol | 38.49 | 37.46 |
| KRH35221 | Soybean | cytosol | 36.77 | 37.41 |
| Zm00001d038769_P003 | Maize | cytosol | 32.65 | 31.77 |
| KXG22385 | Sorghum | cytosol | 32.3 | 31.44 |
| TraesCS1A01G346700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.65 | 31.25 |
| TraesCS1B01G360600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.99 | 30.97 |
| TraesCS1D01G349500.1 | Wheat | cytosol | 32.65 | 30.65 |
| Os05t0526300-02 | Rice | cytosol | 31.96 | 30.19 |
| GSMUA_Achr1P05030_001 | Banana | cytosol | 30.58 | 29.67 |
| HORVU1Hr1G081990.4 | Barley | cytosol | 31.27 | 29.35 |
| KRG91603 | Soybean | cytosol | 27.84 | 27.93 |
Protein Annotations
| EnsemblPlants:Bra003103.1 | EnsemblPlants:Bra003103.1-P | EnsemblPlantsGene:Bra003103 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR20995 | PANTHER:PTHR20995:SF27 |
| PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0002543912 |
| UniProt:M4CFX1 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
AT5G52880 (E=2e-084) | F-box family protein
Coordinates
chrA10:-:5145997..5148217
Molecular Weight (calculated)
32859.7 Da
IEP (calculated)
6.505
GRAVY (calculated)
-0.431
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRYQNLMVG DGLSDHHRYP FACNELISMI DLGYSRLPKD VKAFIFQDCL SAFRLLPEMN TTAAVSAANL LVKSVESAFP KQKKNLAIVQ FKQAKVALKR
101: RTKSHEESRD TPSLPQDVLV HIFSLLDVSS LISSSQVSRS WNLATHEGSL WRSLFNLHFS HDVLTHIHPG FDWREAFKNE CIVYNLSKML RSGRGYCSYC
201: DTLVWHDNFR CPKKQCQFES GKEQLDPILT HQVVNYLLGI TSSSDESNLD ESDSVDSGST ESDSVESDSD DGDGPGLWAN PKKHTERIPT P
101: RTKSHEESRD TPSLPQDVLV HIFSLLDVSS LISSSQVSRS WNLATHEGSL WRSLFNLHFS HDVLTHIHPG FDWREAFKNE CIVYNLSKML RSGRGYCSYC
201: DTLVWHDNFR CPKKQCQFES GKEQLDPILT HQVVNYLLGI TSSSDESNLD ESDSVDSGST ESDSVESDSD DGDGPGLWAN PKKHTERIPT P
001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
Arabidopsis Description
F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.