CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038769_P003	Maize	cytosol	93.98	93.98
Os05t0526300-02	Rice	cytosol	73.58	71.43
TraesCS1D01G349500.1	Wheat	cytosol	65.89	63.55
HORVU1Hr1G081990.4	Barley	cytosol	65.55	63.23
TraesCS1A01G346700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.21	63.16
TraesCS1B01G360600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.88	62.58
GSMUA_Achr1P05030_001	Banana	cytosol	44.15	44.0
KRH35221	Soybean	cytosol	38.8	40.56
VIT_16s0050g01810.t01	Wine grape	cytosol	39.8	39.8
AT5G52880.1	Thale cress	cytosol	34.45	38.29
Solyc03g007750.2.1	Tomato	nucleus	35.45	36.18
PGSC0003DMT400051396	Potato	nucleus	35.12	36.08
Bra003105.1-P	Field mustard	nucleus	33.78	35.69
KRG91603	Soybean	cytosol	33.11	34.14
Bra003103.1-P	Field mustard	cytosol	31.44	32.3

Protein Annotations

EnsemblPlants:KXG22385	EnsemblPlantsGene:SORBI_3009G205200	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR20995	PANTHER:PTHR20995:SF27	PFAM:PF12937
PFscan:PS50181	ProteinID:KXG22385	ProteinID:KXG22385.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI00081ADEF5	UniProt:A0A1B6PA85	MapMan:19.2.2.8.1.4.6	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:55360166..55365542

Molecular Weight (calculated)

33764.0 Da

IEP (calculated)

8.222

GRAVY (calculated)

-0.289

Length

299 amino acids

Sequence
(BLAST)

001: MPLRRRQPRR PETGAAERYR EMRIGAALSR PWDYPTACGE LAALLRLGYA DLPKAAQALV ASDVLLAFRL LPDVQTGYAV STANVLLQAV EVALPKQKKA
101: QAVSEFKHSI IAHKRRSRVQ QNSGSPDIPQ DILVHIFSFL DMHSLVAAGL VCWSWNSAAN DNKLWKMNYS IFFGLSHLSC NNIPVSGVHY SMNSVSDYPS
201: FSWKESFHSK YEECASWKFA SNRAFCAHCR SVIWLSNLTC ASPHHCPKNR QDEVKLRPLL PDTVAKYILH VEDLAASSSE SDDTDDSDYE NWHPRFWVL

Best Arabidopsis Sequence Match ( AT5G52880.1 )
(BLAST)

001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL

Arabidopsis Description

F-box protein At5g52880 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.