Factsheet for PGSC0003DMT400014003

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
vacuole 1
peroxisome 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2849g00010.t01	Wine grape	peroxisome	33.28	72.08
PGSC0003DMT400055489	Potato	mitochondrion	41.08	70.08
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	74.06	69.87
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	72.11	67.75
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	71.96	67.61
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	71.96	67.61
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	71.96	67.61
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	71.81	67.46
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	71.81	67.37
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	71.66	67.32
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	71.51	67.18
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	71.51	67.18
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	71.06	66.76
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	46.78	66.52
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	68.67	66.47
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	71.21	66.06
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	71.06	65.65
VIT_16s0039g01300.t01	Wine grape	vacuole	71.81	65.26
PGSC0003DMT400080765	Potato	peroxisome	42.43	65.06
PGSC0003DMT400055529	Potato	cytosol	15.89	63.47
KRH74070	Soybean	peroxisome	63.72	60.46

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:102605661
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ncoils:Coil	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824
InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M1A3M4	PFAM:PF00221	EnsemblPlantsGene:PGSC0003DMG400005492
PGSC:PGSC0003DMG400005492	EnsemblPlants:PGSC0003DMT400014003	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557
UniParc:UPI000295C7ED	RefSeq:XP_006354305.1	SEG:seg	:	:	:

Description

Phenylalanine ammonia-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400005492]

Coordinates

chr5:+:36342746..36347409

Molecular Weight (calculated)

73693.3 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.146

Length

667 amino acids

Sequence
(BLAST)

001: MDYSQDFSIK SDDQQRYDPL CWNMAEDTLK GSHHDEVKKM VDVFRKPVIR LGGGEMLTIG NVAAIATRSG MESVKVELSE AARAGVKASS DWIIEGMNKG
101: TDSNGVTTGF GATSHRRTKQ GAALQKELIR FLNAGVFGNE MMYSHTKLPQ SATRSAMLVR INTLLKGYSG IRFEILETMT KFLNNNITPC LPVHTSCSDL
201: VPLSYIAGLL MGRPNSKATK PNGELLNAVQ AFHEVGIDTG FFELQPKEGI ALVNGTCVGS GLASIVLYET NILVVLSEVL SAFFVEAMHG QHILNGSNSY
301: VMEIDEKRNK HDCYVLGKSP HWLGPQIEVI REATTMIERE INSVDDNPLI DVSRNKALHG GNFQGISIGV SMDNTRLALA SIGKLIFAQF SDLVSNGLPS
401: NLSGSRSSSL DYGFKGAEIS MASYCSELQF LANPVTNHVQ SAEQHNQDVN SLALISSRKT SEAVDILKLM SSTYLVALCQ AIDLRHLEEN LEAAVKNAVS
501: LVSQNGELDH LSIRFCEKDL LKVVDSEYVF AYADDPCNAN YPLIQKLRQI LMDHARDEEK ILSNSIFQKI SAFEEELKVV LSEEIESARC DFDNCKSSIP
601: NRIKECKSYP LYKFVREELE INFLTGEKVK SPGEEINKVL ISMNEGMLID PLLNCLKDWN GVPLPFC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.