Factsheet for VIT_00s2508g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01320.t01	Wine grape	peroxisome	27.29	100.0
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	99.15	65.49
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	98.93	65.35
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	98.93	65.35
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	98.93	65.35
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	98.08	64.79
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	97.65	64.51
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	97.65	64.51
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	97.44	64.37
VIT_16s0039g01300.t01	Wine grape	vacuole	99.79	63.76
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	95.1	62.82
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	86.14	57.14
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	85.93	56.84
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	87.21	56.57
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	85.71	56.07
PGSC0003DMT400014003	Potato	peroxisome	66.52	46.78
VIT_11s0016g01640.t01	Wine grape	peroxisome	57.78	40.75
VIT_11s0016g01520.t01	Wine grape	peroxisome	66.52	34.86
VIT_11s0016g01510.t01	Wine grape	peroxisome	17.06	22.54
VIT_00s2849g00010.t01	Wine grape	peroxisome	14.07	21.43
VIT_11s0016g01660.t01	Wine grape	peroxisome	0.43	1.15

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase
ProteinID:CCB50567	ProteinID:CCB50567.1	ProteinID:CCB57471	ProteinID:CCB57471.1	UniProt:F6HS12	EMBL:FN595750
EMBL:FN596161	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI000210888E	ArrayExpress:VIT_00s2508g00010	EnsemblPlantsGene:VIT_00s2508g00010	EnsemblPlants:VIT_00s2508g00010.t01	RefSeq:XP_003635657	RefSeq:XP_003635657.1
SEG:seg	:	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HS12]

Coordinates

chrUn:+:42205073..42207438

Molecular Weight (calculated)

50527.5 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.150

Length

469 amino acids

Sequence
(BLAST)

001: MDATNCHGSN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREG DVNVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRFL NAGIFGNGRE SCHTLPHSTT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL TGRPNSKAVG PSGEVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAVFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPHIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGS RNPSLDYGFK GAEIAMASYC SELQFLANP

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.