Factsheet for VIT_16s0039g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	65.35	98.93
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	98.03	98.03
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	98.03	98.03
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	97.89	97.89
VIT_16s0039g01320.t01	Wine grape	peroxisome	17.61	97.66
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	97.61	97.61
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	97.46	97.46
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	97.18	97.18
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	96.9	96.9
VIT_00s2849g00010.t01	Wine grape	peroxisome	41.97	96.75
VIT_16s0039g01300.t01	Wine grape	vacuole	98.17	94.96
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	93.66	93.66
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	86.06	84.51
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.65	83.82
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	83.38	83.5
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	83.1	83.45
PGSC0003DMT400014003	Potato	peroxisome	67.75	72.11
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.77	59.55
VIT_11s0016g01660.t01	Wine grape	peroxisome	13.1	53.45
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.24	50.17
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.38	26.76

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:9.2.1.1.1
InterPro:Aromatic_Lyase	ProteinID:CCB50557	ProteinID:CCB50557.1	UniProt:F6HEB1	EMBL:FN595750	InterPro:Fumarase/histidase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698
GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548
InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGR:TC66014
TIGRFAMs:TIGR01226	UniParc:UPI0002108A67	ArrayExpress:VIT_16s0039g01110	EnsemblPlantsGene:VIT_16s0039g01110	EnsemblPlants:VIT_16s0039g01110.t01	SEG:seg

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEB1]

Coordinates

chr16:-:603763..610090

Molecular Weight (calculated)

77051.3 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.168

Length

710 amino acids

Sequence
(BLAST)

001: MDAMNCHESN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREG DVSVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRFL NAGIFGNGTE SCHTLPHSAT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL TGRPNSKAVG PSGEVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAVFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPHIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGS RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVQSAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSTTYI VALCQAIDLR HLEENLKSTV KKTVSHVAKK TLTTGANGGL HPSRFCEKDL LKVVDREHVF AYIDDPCSAT YPLMQKLRQV LVEHALSNGE
601: NEKNGSTSIF QKIVAFEEEL KAVLPKEVES ARGAVESGNP SIPNRIKECR SYPLYKFVRE ELGTGLLTGE KVRSPGEEFD KVFTAMCEGE IIDPLLGCLS
701: AWNGAPLPIC

Best Arabidopsis Sequence Match ( AT3G10340.1 )
(BLAST)

001: MELCNQNNHI TAVSGDPLNW NATAEALKGS HLDEVKRMVK EYRKEAVKLG GETLTIGQVA AVARGGGGST VELAEEARAG VKASSEWVME SMNRGTDSYG
101: VTTGFGATSH RRTKQGGALQ NELIRFLNAG IFGPGAGDTS HTLPKPTTRA AMLVRVNTLL QGYSGIRFEI LEAITKLLNH EITPCLPLRG TITASGDLVP
201: LSYIAGLLTG RPNSKAVGPS GETLTASEAF KLAGVSSFFE LQPKEGLALV NGTAVGSGLA STVLFDANIL AVLSEVMSAM FAEVMQGKPE FTDHLTHKLK
301: HHPGQIEAAA IMEHILDGSS YVKEAQLLHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRA ATKMIEREIN SVNDNPLIDV SRNKALHGGN FQGTPIGVAM
401: DNSRLAIASI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMASYCSEL QFLANPVTNH VQSAEQHNQD VNSLGLISSR KTAEAVDILK
501: LMSTTYLVAL CQAVDLRHLE ENLKKAVKSA VSQVAKRVLT VGANGELHPS RFTERDVLQV VDREYVFSYA DDPCSLTYPL MQKLRHILVD HALADPEREA
601: NSATSVFHKI GAFEAELKLL LPKEVERVRV EYEEGTSAIA NRIKECRSYP LYRFVRDELN TELLTGENVR SPGEEFDKVF LAISDGKLID PLLECLKEWN
701: GAPVSIC

Arabidopsis Description

PAL4Phenylalanine ammonia-lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS45]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.