Factsheet for VIT_06s0004g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	56.07	85.71
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	84.24	85.07
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	84.1	84.93
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	83.96	84.79
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.82	84.65
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	83.82	84.65
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	83.82	84.65
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	83.68	84.51
VIT_00s2849g00010.t01	Wine grape	peroxisome	36.26	84.42
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.54	84.37
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	84.94	84.23
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	82.85	83.66
VIT_16s0039g01300.t01	Wine grape	vacuole	83.54	81.61
KRH74070	Soybean	peroxisome	72.8	74.25
VIT_16s0039g01320.t01	Wine grape	peroxisome	12.83	71.88
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.09	59.4
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.83	52.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.9	50.39
VIT_11s0016g01510.t01	Wine grape	peroxisome	12.97	26.2

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100241575
wikigene:100241575	MapMan:9.2.1.1.1	UniProt:A5BPT8	ProteinID:ADP07927	ProteinID:ADP07927.1	EMBL:AM466869
InterPro:Aromatic_Lyase	ProteinID:CAN74850	ProteinID:CAN74850.1	ProteinID:CCB43683	ProteinID:CCB43683.1	EMBL:FN594951
InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748
GO:GO:0045548	EMBL:GU585850	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100241575
wikigene:LOC100241575	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGR:TC61248	TIGRFAMs:TIGR01226	UniParc:UPI0001521614
ArrayExpress:VIT_06s0004g02620	EnsemblPlantsGene:VIT_06s0004g02620	EnsemblPlants:VIT_06s0004g02620.t01	unigene:Vvi.5899	RefSeq:XP_002285277	RefSeq:XP_002285277.1

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:A5BPT8]

Coordinates

chr6:-:3233462..3236945

Molecular Weight (calculated)

77970.2 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.154

Length

717 amino acids

Sequence
(BLAST)

001: MEFSHHNGNG NGKVDANGFC MKAADPLYWA AAAETLKGSH LEEVKRMVAD FRKPVVRLGG ESLNIAQVAA VAATGSDGVT VELSESARAG VQASSNWVME
101: SMNQGTDSYG VTTGFGATSH RRTKQGNALQ KELIRFLNAG IFGKGTESCH TLPHSATRAA MLVRINTLLQ GYSGIRFEIL EATVKLLNAN ISPCLPLRGT
201: ISASGDLVPL SYIAGLLTGR PNSRAVGPNG ESLNAEEAFR LAGIDGGFFE LQPKEGLALV NGTAVGSGLA STVLFEANIL AVLSEVLSAI FAEVMQGKPE
301: FTDHLTHKLK HHPGQIEAAA IMEHILDGSA YVKAAQMLHE IDPLQKPKQD RYALRTSPQW LGPQIEVIRT STKSIEREIN SVNDNPLIDV SRNKALHGGN
401: FQGTPIGVSM DNTRLAIASI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMAAYCSEL QFLANPVTNH VQSAEQHNQD VNSLGLISSR
501: KTEEAIDILK LMSSTYLVAL CQAIDLRHLE ENLKNTVKNT VSQVAKKVLT IGINGELHPS RFCEKDLLKV VDREHVFAYI DDPCSATYPL MQNLRQVLVD
601: HALMNNEDLR NSSTSIFLKI GAFEEELKTL LPKDVESTRI AFDNGNLAIP NRIKECRSYP LYKFVREESG TEFLTGEKVT SPGEEFDKVF SAICEGKIID
701: PLLKCLNDWD GTPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.