Factsheet for VIT_16s0039g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	63.76	99.79
VIT_00s2849g00010.t01	Wine grape	peroxisome	41.83	99.68
VIT_16s0039g01320.t01	Wine grape	peroxisome	17.3	99.22
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	95.91	99.15
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	95.78	99.01
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	95.5	98.73
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	95.37	98.59
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	95.23	98.45
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	94.96	98.17
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	94.69	97.89
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	94.41	97.61
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	91.01	94.08
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.11	84.37
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	80.52	83.59
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	81.61	83.54
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	80.52	83.36
PGSC0003DMT400014003	Potato	peroxisome	65.26	71.81
VIT_11s0016g01640.t01	Wine grape	peroxisome	53.68	59.25
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.53	52.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	61.04	50.06
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.22	27.32

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100853659
wikigene:100853659	EntrezGene:100854997	wikigene:100854997	MapMan:9.2.1.1.1	ProteinID:AEX32784	ProteinID:AEX32784.1
ProteinID:AEX32790	ProteinID:AEX32790.1	InterPro:Aromatic_Lyase	ProteinID:CCB50566	ProteinID:CCB50566.1	UniProt:F6HEC0
EMBL:FN595750	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	EMBL:JN858957	EMBL:JN858963
InterPro:L-Aspartase-like	EntrezGene:LOC100853659	wikigene:LOC100853659	EntrezGene:LOC100854997	wikigene:LOC100854997	PFAM:PF00221
ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf
SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI0002108A6C	ArrayExpress:VIT_16s0039g01300	EnsemblPlantsGene:VIT_16s0039g01300	EnsemblPlants:VIT_16s0039g01300.t01
RefSeq:XP_003633987	RefSeq:XP_003633987.1	SEG:seg	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEC0]

Coordinates

chr16:+:706775..712536

Molecular Weight (calculated)

80149.1 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.170

Length

734 amino acids

Sequence
(BLAST)

001: MQLEFLYSLC MNCTYMYHWI SLLNMDATNC HGSNKVESFC VSDPLNWGMA AETLKGSHLD EVKRMVAEYR KPVVRLGGET LTISQVAAIA GREGDVSVEL
101: SETARAGVNA SSEWVMESMS KGTDSYGVTT GFGATSHRRT KQGGALQKEL IRFLNAGIFG NGRESCHTLP HSTTRAAMLV RINTLLQGYS GIRFEILEAI
201: TKLLNHNITP CLPLRGTVTA SGDLVPLSYI AGLLTGRPNS KAVGPSGEVV NAEEAFKMAG IESGFFELQP KEGLALVNGT AVGSGLASMV LFETNVLAVL
301: SEVLSAVFAE VMQGKPEFTD HLTHKLKHHP GQIEAAAIME HILDGSSYVK EAKKLHEMDP LQKPKQDRYA LRTSPQWLGP HIEVIRASTK SIEREINSVN
401: DNPLIDVSRN KALHGGNFQG TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGSRNPSLD YGFKGAEIAM ASYCSELQFL ANPVTNHVES
501: AEQHNQDVNS LGLISSRKTA EAVDILKLMS TTYLVALCQA IDLRHLEENL KSTVKKTVSH VAKKTLTTGA NGELHPSRFC EKDLLKVVDR EHVFAYIDDP
601: CSATYPLMQK VRQVLVEHAL NNGENEKNGS TSIFQKIVAF EEELKAVLPK EVESARGGVE SGNPSIPNRI KECRSYPLYK FVREELGTGL LTGEKVRSPG
701: EDFDKVFTAM CEGKIIDPLL DCLSAWNGAP LPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.