Factsheet for VIT_16s0039g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	98.87	98.87
VIT_00s2849g00010.t01	Wine grape	peroxisome	42.54	98.05
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	98.03	98.03
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	64.51	97.65
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	97.32	97.32
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	97.32	97.32
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	97.18	97.18
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	96.9	96.9
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	96.62	96.62
VIT_16s0039g01300.t01	Wine grape	vacuole	97.89	94.69
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	94.08	94.08
VIT_16s0039g01320.t01	Wine grape	peroxisome	16.9	93.75
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	86.06	84.51
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.37	83.54
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	83.38	83.5
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	82.82	83.17
PGSC0003DMT400014003	Potato	peroxisome	67.32	71.66
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.35	59.1
VIT_11s0016g01660.t01	Wine grape	peroxisome	13.1	53.45
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.1	50.06
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.52	27.04

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100256293
wikigene:100256293	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ProteinID:CCB50558	ProteinID:CCB50558.1	UniProt:F6HEB2
EMBL:FN595750	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100256293
wikigene:LOC100256293	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI0002108A68	ArrayExpress:VIT_16s0039g01120
EnsemblPlantsGene:VIT_16s0039g01120	EnsemblPlants:VIT_16s0039g01120.t01	RefSeq:XP_003633985	RefSeq:XP_003633985.1	SEG:seg	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEB2]

Coordinates

chr16:-:613506..616051

Molecular Weight (calculated)

77109.5 Da

IEP (calculated)

6.709

GRAVY (calculated)

-0.167

Length

710 amino acids

Sequence
(BLAST)

001: MEAMNCHGSK KVESFVVSDP LNWGVAAEAL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREE DVSVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRFL NAGIFGNGRE SCHTLPHSAT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL IGRPNSKAVG PSGDVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAVFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPHIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLSGS RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVQSAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSTTYL VALCQAIDLR HLEENLKSTV KKTVSHVAKK TLTTGANGGL HPSRFCEKDL LKVVDREHVF AYIDDPCSAT YPLMQKLRQV LVEHALSNGE
601: NEKNGSTSIF QKIVAFEEEL KAVLPKEVES ARGGVESGNP SIPNRIKECR SYPLYKFVRE ELGTGLLTGE KVRSPGEEFD KVFTAMCEGK IIDPLLDCLS
701: AWNGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.