Factsheet for PGSC0003DMT400060308

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	97.17	96.9
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	57.14	86.14
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	84.02	83.66
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	83.59	83.24
VIT_16s0039g01170.t01	Wine grape	cytosol, peroxisome, plastid	83.59	83.24
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	83.45	83.1
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	83.45	83.1
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	83.45	83.1
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.45	83.1
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	83.31	82.84
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	83.17	82.82
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	82.89	82.54
PGSC0003DMT400080765	Potato	peroxisome	50.64	82.3
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	82.46	80.75
VIT_16s0039g01300.t01	Wine grape	vacuole	83.59	80.52
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	81.75	80.39
VIT_00s2849g00010.t01	Wine grape	peroxisome	34.94	80.19
PGSC0003DMT400055489	Potato	mitochondrion	44.27	80.05
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	77.09	79.1
PGSC0003DMT400014003	Potato	peroxisome	69.87	74.06
KRH74070	Soybean	peroxisome	71.57	71.98
PGSC0003DMT400055529	Potato	cytosol	15.84	67.07

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:102582618
MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829
GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like
UniProt:M1C5K7	PFAM:PF00221	EnsemblPlantsGene:PGSC0003DMG400023458	PGSC:PGSC0003DMG400023458	EnsemblPlants:PGSC0003DMT400060308	ScanProsite:PS00488
PANTHER:PTHR10362	PANTHER:PTHR10362:SF32	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557
TIGRFAMs:TIGR01226	UniParc:UPI000294930A	RefSeq:XP_006345786.1	:	:	:

Description

Phenylalanine ammonia-lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400023458]

Coordinates

chr5:+:51694756..51698709

Molecular Weight (calculated)

77515.0 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.207

Length

707 amino acids

Sequence
(BLAST)

001: MEYVNGNSNG THDDQVFCVK DPLNWNMSAD ALRGSHLDEV KKMVEEYRKP VVRLGGETLT VAQVAAIAAQ SGTDVTVQLS EAARAGVKAS SDWVMEGMRN
101: GTDSYGVTTG FGATSHRRTK QGAALQKELI RFLNAGVFGN GTESCHMLPH STTRAAMLVR INTLLQGYSG IRFEILEAIT KLLNNNITPC LPLRGTITAS
201: GDLVPLSYIA GLLTGRTNSK ATGPNGELLD AVNAFQRAGI ESGFFELQPK EGLALVNGTA VGSGLASMVL FEANILAILS EVLSAIFAEV MQGKPEFTDH
301: LTHKLKHHPG QIEAAAIMEH ILDGSSYVKE AKKIHEMDPL QKPKQDRYAL RTSPQWLGPQ IEVIRSSTKM IEREINSVND NPLIDVSRNK ALHGGNFQGT
401: PIGVSMDNTR LALASIGKLL FAQFSELVND YYNNGLPSNL TGGRNPSLDY GFKGAEIAMA SYCSELQFLA NPVTNHVQSA EQHNQDVNSL GLISSRKTEE
501: AVDILKLMSS TYLVALCQAI DLRHLEENLK ATVKSAVSLA AKKVLITGQN GELHQSRFCE KDLLKMVDRE YVFSYADDPC SANYPLMQKL RQVLVDHALK
601: NSNTEIFQKI SAFEEELKLV LPKEIESIRC DLENGKAPIG NRIQECRSYP LYKFVREELG AKYLTGENVL SPGEVFDKVF TAMNEGKLID PLLNCLKEWN
701: GAPLPLR

Best Arabidopsis Sequence Match ( AT3G53260.1 )
(BLAST)

001: MDQIEAMLCG GGEKTKVAVT TKTLADPLNW GLAADQMKGS HLDEVKKMVE EYRRPVVNLG GETLTIGQVA AISTVGGSVK VELAETSRAG VKASSDWVME
101: SMNKGTDSYG VTTGFGATSH RRTKNGTALQ TELIRFLNAG IFGNTKETCH TLPQSATRAA MLVRVNTLLQ GYSGIRFEIL EAITSLLNHN ISPSLPLRGT
201: ITASGDLVPL SYIAGLLTGR PNSKATGPDG ESLTAKEAFE KAGISTGFFD LQPKEGLALV NGTAVGSGMA SMVLFEANVQ AVLAEVLSAI FAEVMSGKPE
301: FTDHLTHRLK HHPGQIEAAA IMEHILDGSS YMKLAQKVHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRQ ATKSIEREIN SVNDNPLIDV SRNKAIHGGN
401: FQGTPIGVSM DNTRLAIAAI GKLMFAQFSE LVNDFYNNGL PSNLTASSNP SLDYGFKGAE IAMASYCSEL QYLANPVTSH VQSAEQHNQD VNSLGLISSR
501: KTSEAVDILK LMSTTFLVGI CQAVDLRHLE ENLRQTVKNT VSQVAKKVLT TGINGELHPS RFCEKDLLKV VDREQVFTYV DDPCSATYPL MQRLRQVIVD
601: HALSNGETEK NAVTSIFQKI GAFEEELKAV LPKEVEAARA AYGNGTAPIP NRIKECRSYP LYRFVREELG TKLLTGEKVV SPGEEFDKVF TAMCEGKLID
701: PLMDCLKEWN GAPIPIC

Arabidopsis Description

PAL2Phenylalanine ammonia-lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:P45724]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.