Factsheet for VIT_16s0039g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01240.t01	Wine grape	cytosol, peroxisome, plastid	99.3	99.3
VIT_16s0039g01320.t01	Wine grape	peroxisome	17.89	99.22
VIT_00s2508g00010.t01	Wine grape	cytosol, peroxisome, plastid	65.35	98.93
VIT_16s0039g01280.t01	Wine grape	cytosol, peroxisome, plastid	98.87	98.87
VIT_16s0039g01130.t01	Wine grape	cytosol, peroxisome, plastid	98.17	98.17
VIT_00s2849g00010.t01	Wine grape	peroxisome	42.54	98.05
VIT_16s0039g01360.t01	Wine grape	cytosol, peroxisome, plastid	97.61	97.61
VIT_16s0039g01110.t01	Wine grape	cytosol, peroxisome, plastid	97.18	97.18
VIT_16s0039g01100.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	96.9	96.9
VIT_16s0039g01120.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	96.9	96.9
VIT_16s0039g01300.t01	Wine grape	vacuole	98.73	95.5
VIT_08s0040g01710.t01	Wine grape	cytosol, peroxisome, plastid	93.94	93.94
VIT_13s0019g04460.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	86.06	84.51
VIT_06s0004g02620.t01	Wine grape	cytosol, peroxisome, plastid	84.93	84.1
Solyc05g056170.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	83.52	83.64
PGSC0003DMT400060308	Potato	cytosol, peroxisome, plastid	83.24	83.59
PGSC0003DMT400014003	Potato	peroxisome	67.61	71.96
VIT_11s0016g01640.t01	Wine grape	peroxisome	55.49	59.25
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.96	52.87
VIT_11s0016g01520.t01	Wine grape	peroxisome	63.1	50.06
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.66	27.32

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100245997
wikigene:100245997	MapMan:9.2.1.1.1	InterPro:Aromatic_Lyase	ProteinID:CAA53581	ProteinID:CAA53581.1	ProteinID:CCB50561
ProteinID:CCB50561.1	UniProt:F6HEB5	EMBL:FN595750	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987
GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083
InterPro:L-Aspartase-like	EntrezGene:LOC100245997	wikigene:LOC100245997	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF30	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI00015C8C0B	ArrayExpress:VIT_16s0039g01170	EnsemblPlantsGene:VIT_16s0039g01170	EnsemblPlants:VIT_16s0039g01170.t01	unigene:Vvi.125	EMBL:X75967
RefSeq:XP_002268256	RefSeq:XP_002268256.1	:	:	:	:

Description

Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:F6HEB5]

Coordinates

chr16:+:649907..652554

Molecular Weight (calculated)

77079.3 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.185

Length

710 amino acids

Sequence
(BLAST)

001: MDATNCHGSN KVESFCVSDP LNWGMAAETL KGSHLDEVKR MVAEYRKPVV RLGGETLTIS QVAAIAGREG DVGVELSETA RAGVNASSEW VMESMSKGTD
101: SYGVTTGFGA TSHRRTKQGG ALQKELIRFL NAGIFGNGRE SCHTLPHSAT RAAMLVRINT LLQGYSGIRF EILEAITKLL NHNITPCLPL RGTVTASGDL
201: VPLSYIAGLL TGRPNSKAVG PSGEVVNAEE AFKMAGIESG FFELQPKEGL ALVNGTAVGS GLASMVLFET NVLAVLSEVL SAIFAEVMQG KPEFTDHLTH
301: KLKHHPGQIE AAAIMEHILD GSSYVKEAKK LHEMDPLQKP KQDRYALRTS PQWLGPQIEV IRASTKSIER EINSVNDNPL IDVSRNKALH GGNFQGTPIG
401: VSMDNTRLAI AAIGKLMFAQ FSELVNDFYN NGLPSNLAGS RNPSLDYGFK GAEIAMASYC SELQFLANPV TNHVESAEQH NQDVNSLGLI SSRKTAEAVD
501: ILKLMSTTYL VALCQAIDLR HLEENLKSTV KKTVSHVAKK TLTIGANGEL HPSRFCEKDL LKVVDREHVF AYIDDPCSAT YPLMQKVRQV LVEHALNNGE
601: SEKNGSTSIF QKIGAFEEEL KAVLPKEVES ARDGVESGNP SIPNRIKECR SYPLYKFVRE ELGTGLLTGE KVRSPGEDFD KVFTAMCEGK IIDPLLDCLS
701: AWNGAPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.