Factsheet for Bra008685.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029831.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15600.1	Bra029831.1-P	AT3G10340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69512	Canola	cytosol, plastid	100.0	100.0
AT5G15600.1	Thale cress	plastid	75.97	77.17
Bra038321.1-P	Field mustard	plastid	44.96	52.25
Bra023527.1-P	Field mustard	nucleus, plastid	59.69	52.03
Bra020817.1-P	Field mustard	nucleus	37.21	48.48
Bra017377.1-P	Field mustard	cytosol	44.96	47.93
Bra026545.1-P	Field mustard	plastid	40.31	47.71
Bra025124.1-P	Field mustard	plastid	41.09	44.54
Bra001035.1-P	Field mustard	cytosol	64.34	40.89

Protein Annotations

EnsemblPlants:Bra008685.1	EnsemblPlants:Bra008685.1-P	EnsemblPlantsGene:Bra008685	PANTHER:PTHR33403	PANTHER:PTHR33403:SF12	SEG:seg
UniParc:UPI0002544DFE	UniProt:M4CWT8	MapMan:20.1.5.1.3	:	:	:

Description

AT3G02180 (E=1e-014) SP1L3 | SP1L3 (SPIRAL 1-LIKE3)

Coordinates

chrA10:-:13383083..13383547

Molecular Weight (calculated)

13035.9 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.844

Length

129 amino acids

Sequence
(BLAST)

001: MGKARGVNSG GGESSLGYLF GSGESVSKPN KPAVNTSFTT TTTTTTTTNG AGGKPTTTST TNTTTGDKNK TEEEKKQMSA GVRGSPNNYL RTEGQNCGNF
101: LTDRPSTKVH AAPGGGSSLG YLFGSGSGK

Best Arabidopsis Sequence Match ( AT5G15600.1 )
(BLAST)

001: MGKARGVNSG GGESSLGYLF GSGESVPKPN KPNAKTGFTT TTTTTTTTDG AGGRPKTTTT TTTTGDKNKT EENSAGVRGS PNNYYRSDGQ NCGNFLTERP
101: STKVHAAPGG GSSLGYLFGS GPCGSDK

Arabidopsis Description

SP1L4Protein SPIRAL1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF22]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.