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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 3
  • cytosol 1
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69243 Canola plastid 99.08 99.08
CDY45707 Canola plastid 96.33 94.59
AT2G03680.2 Thale cress plastid 77.98 71.43
Bra025124.1-P Field mustard plastid 77.98 71.43
Bra017377.1-P Field mustard cytosol 77.06 69.42
KXG23503 Sorghum nucleus 54.13 59.0
Os12t0502000-01 Rice cytosol, mitochondrion, nucleus, plastid 54.13 58.42
Bra038321.1-P Field mustard plastid 57.8 56.76
Os11t0629400-01 Rice extracellular 53.21 50.43
Zm00001d048795_P001 Maize mitochondrion 51.38 49.56
EES10151 Sorghum mitochondrion 50.46 45.45
Bra020817.1-P Field mustard nucleus 40.37 44.44
Bra008685.1-P Field mustard cytosol, plastid 47.71 40.31
Bra023527.1-P Field mustard nucleus, plastid 42.2 31.08
Zm00001d023735_P001 Maize cytosol, plasma membrane, plastid 40.37 27.33
Bra001035.1-P Field mustard cytosol 47.71 25.62
Protein Annotations
EnsemblPlants:Bra026545.1EnsemblPlants:Bra026545.1-PEnsemblPlantsGene:Bra026545PANTHER:PTHR33403PANTHER:PTHR33403:SF11SEG:seg
UniParc:UPI00025464F5UniProt:M4ECN5MapMan:20.1.5.1.3:::
Description
AT2G03680 (E=3e-026) SPR1, SKU6 | SPR1 (SPIRAL1)
Coordinates
chrA02:-:20132330..20132742
Molecular Weight (calculated)
10895.7 Da
IEP (calculated)
9.145
GRAVY (calculated)
-0.418
Length
109 amino acids
Sequence
(BLAST)
001: MGRGNSCGGG QSSLNYLFGA PPAPKPTAPA PPAETASPAP AAVTVTATTT VEPAELNKQI PAGIKTPVNN YARSEGQNTG NFITDRPSTK VHAAPGGGSS
101: LDYLFTGGK
Best Arabidopsis Sequence Match ( AT2G03680.3 )
(BLAST)
001: MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK
101: VHAAPGGGSS LDYLFTGGK
Arabidopsis Description
SPR1Protein SPIRAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.