Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04162 | Canola | cytosol | 100.0 | 100.0 |
| CDY33112 | Canola | cytosol, mitochondrion | 93.39 | 99.12 |
| Bra025124.1-P | Field mustard | plastid | 80.99 | 82.35 |
| Bra026545.1-P | Field mustard | plastid | 69.42 | 77.06 |
| AT2G03680.2 | Thale cress | plastid | 69.42 | 70.59 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 52.07 | 62.38 |
| KXG23503 | Sorghum | nucleus | 50.41 | 61.0 |
| Zm00001d048795_P001 | Maize | mitochondrion | 52.07 | 55.75 |
| Bra038321.1-P | Field mustard | plastid | 49.59 | 54.05 |
| Os11t0629400-01 | Rice | extracellular | 51.24 | 53.91 |
| EES10151 | Sorghum | mitochondrion | 52.89 | 52.89 |
| Bra008685.1-P | Field mustard | cytosol, plastid | 47.93 | 44.96 |
| Bra020817.1-P | Field mustard | nucleus | 36.36 | 44.44 |
| Bra023527.1-P | Field mustard | nucleus, plastid | 38.02 | 31.08 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 36.36 | 27.33 |
| Bra001035.1-P | Field mustard | cytosol | 44.63 | 26.6 |
Protein Annotations
Description
AT2G03680 (E=3e-034) SPR1, SKU6 | SPR1 (SPIRAL1)
Coordinates
chrA09:-:14805262..14805696
Molecular Weight (calculated)
11908.8 Da
IEP (calculated)
8.477
GRAVY (calculated)
-0.391
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGNSCGGG QSSLNYLFGG GGDAPPPKPA PAPSAEPTNT AAAPAQAPVA VTATALTTAT TSVEPAEVNK QIPAGIKTPV NNYARAEGQN TGNFLTDRPS
101: TKVHAAPGGG SSLDYLFTGG K
101: TKVHAAPGGG SSLDYLFTGG K
001: MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK
101: VHAAPGGGSS LDYLFTGGK
101: VHAAPGGGSS LDYLFTGGK
Arabidopsis Description
SPR1Protein SPIRAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.