Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017377.1-P | Field mustard | cytosol | 99.12 | 93.39 |
| CDY04162 | Canola | cytosol | 99.12 | 93.39 |
| CDY02981 | Canola | cytosol, mitochondrion | 77.19 | 78.57 |
| CDY45707 | Canola | plastid | 76.32 | 78.38 |
| CDY69243 | Canola | plastid | 72.81 | 76.15 |
| CDY51204 | Canola | plastid | 78.95 | 75.63 |
| AT2G03680.2 | Thale cress | plastid | 73.68 | 70.59 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 55.26 | 62.38 |
| KXG23503 | Sorghum | nucleus | 53.51 | 61.0 |
| CDY54148 | Canola | plastid | 54.39 | 55.86 |
| Zm00001d048795_P001 | Maize | mitochondrion | 53.51 | 53.98 |
| Os11t0629400-01 | Rice | extracellular | 53.51 | 53.04 |
| EES10151 | Sorghum | mitochondrion | 55.26 | 52.07 |
| CDY50305 | Canola | plastid | 54.39 | 51.67 |
| CDX90984 | Canola | cytosol | 43.86 | 45.87 |
| CDY65232 | Canola | nucleus | 39.47 | 45.45 |
| CDY68263 | Canola | nucleus | 38.6 | 44.44 |
| CDX69512 | Canola | cytosol, plastid | 49.12 | 43.41 |
| CDY63421 | Canola | nucleus | 36.84 | 42.42 |
| CDY26443 | Canola | cytosol | 42.11 | 41.03 |
| CDY34708 | Canola | cytosol, plastid | 30.7 | 38.46 |
| CDX91981 | Canola | nucleus | 45.61 | 35.86 |
| CDX85544 | Canola | nucleus, plastid | 40.35 | 31.08 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 38.6 | 27.33 |
| CDX74269 | Canola | cytosol | 45.61 | 25.62 |
Protein Annotations
| EnsemblPlants:CDY33112 | EnsemblPlantsGene:GSBRNA2T00053776001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF11 | ProteinID:CDY33112 | ProteinID:CDY33112.1 |
| SEG:seg | UniParc:UPI0004EC13A1 | UniProt:A0A078H6Q8 | MapMan:20.1.5.1.3 | : | : |
Description
BnaC09g22080DBnaC09g22080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6Q8]
Coordinates
chrLK032306:+:96331..97524
Molecular Weight (calculated)
11250.1 Da
IEP (calculated)
9.145
GRAVY (calculated)
-0.389
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGNSCGGG QSSLNYLFGG GGDAPPPKPA PAPSAPPAQA PVAVTATALT TATTSVEPAE VNKQIPAGIK TPVNNYARAE GQNTGNFLTD RPSTKVHAAP
101: GGGSSLDYLF TGGK
101: GGGSSLDYLF TGGK
001: MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK
101: VHAAPGGGSS LDYLFTGGK
101: VHAAPGGGSS LDYLFTGGK
Arabidopsis Description
SPR1Protein SPIRAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.