Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001035.1-P | Field mustard | cytosol | 99.51 | 99.51 |
| CDX91981 | Canola | nucleus | 68.47 | 95.86 |
| AT3G02180.1 | Thale cress | cytosol | 49.26 | 81.97 |
| CDX90984 | Canola | cytosol | 34.98 | 65.14 |
| CDX69512 | Canola | cytosol, plastid | 40.89 | 64.34 |
| CDY34708 | Canola | cytosol, plastid | 25.12 | 56.04 |
| CDY26443 | Canola | cytosol | 31.53 | 54.7 |
| CDY54148 | Canola | plastid | 28.08 | 51.35 |
| CDX85544 | Canola | nucleus, plastid | 35.47 | 48.65 |
| CDY45707 | Canola | plastid | 26.11 | 47.75 |
| CDY50305 | Canola | plastid | 28.08 | 47.5 |
| CDY69243 | Canola | plastid | 25.12 | 46.79 |
| CDY33112 | Canola | cytosol, mitochondrion | 25.62 | 45.61 |
| CDY02981 | Canola | cytosol, mitochondrion | 25.12 | 45.54 |
| CDY04162 | Canola | cytosol | 26.6 | 44.63 |
| CDY51204 | Canola | plastid | 25.62 | 43.7 |
| CDY65232 | Canola | nucleus | 21.18 | 43.43 |
| CDY68263 | Canola | nucleus | 21.18 | 43.43 |
| CDY63421 | Canola | nucleus | 19.7 | 40.4 |
Protein Annotations
| EnsemblPlants:CDX74269 | EnsemblPlantsGene:GSBRNA2T00112056001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | ProteinID:CDX74269 | ProteinID:CDX74269.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE3746 | MapMan:20.1.5.1.3 | : | : |
Description
BnaA03g27780D
Coordinates
chrLK031800:-:2009977..2011721
Molecular Weight (calculated)
21898.8 Da
IEP (calculated)
10.347
GRAVY (calculated)
-0.580
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVQLPKTTL NIRQNQKEKR YAKVLRNIGI ISSPLFHEII YFGIILRSFM QEDLCDEAQN EKFAANHRRR HYELQKRSIS MGKARGVNNG VNQSSLDYLF
101: GSGESPSAVA ATMGTTTTTT TTTTTDGTGG RPVTTTTTTV TENKKIPAGV RGSPNNYFRS EGQNCGNFLT ERPSTKVHAA PGGGSSLGYL FGGPSASADS
201: AKK
101: GSGESPSAVA ATMGTTTTTT TTTTTDGTGG RPVTTTTTTV TENKKIPAGV RGSPNNYFRS EGQNCGNFLT ERPSTKVHAA PGGGSSLGYL FGGPSASADS
201: AKK
001: MGKARGVNNG VNESSLGYLF GSGQPSSAAA ATMGTTTTTT TTTTTDGTGG RPITTTTTTV TDNKKTSAGV RGSPNNYFRS EGQNCGNFLT DRPSTKVHAA
101: PGGGSSLDYL FGGPSPAGSG NK
101: PGGGSSLDYL FGGPSPAGSG NK
Arabidopsis Description
SP1L3Protein SPIRAL1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7P8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.