Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68263 | Canola | nucleus | 73.74 | 73.74 |
| CDY65232 | Canola | nucleus | 73.74 | 73.74 |
| AT4G23496.1 | Thale cress | nucleus | 67.68 | 67.68 |
| KRH59959 | Soybean | nucleus | 47.47 | 54.02 |
| VIT_02s0025g00250.t01 | Wine grape | nucleus | 54.55 | 54.0 |
| KRH41229 | Soybean | nucleus | 46.46 | 52.87 |
| KRH77582 | Soybean | nucleus | 48.48 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 51.52 | 50.0 |
| KRH27899 | Soybean | nucleus | 48.48 | 48.48 |
| PGSC0003DMT400032105 | Potato | nucleus | 48.48 | 45.71 |
| Solyc08g081470.2.1 | Tomato | nucleus | 48.48 | 45.71 |
| CDY54148 | Canola | plastid | 45.45 | 40.54 |
| CDX90984 | Canola | cytosol | 43.43 | 39.45 |
| CDY45707 | Canola | plastid | 42.42 | 37.84 |
| CDY69243 | Canola | plastid | 41.41 | 37.61 |
| CDY26443 | Canola | cytosol | 44.44 | 37.61 |
| CDY50305 | Canola | plastid | 45.45 | 37.5 |
| CDY33112 | Canola | cytosol, mitochondrion | 42.42 | 36.84 |
| CDY02981 | Canola | cytosol, mitochondrion | 40.4 | 35.71 |
| CDY51204 | Canola | plastid | 41.41 | 34.45 |
| CDX69512 | Canola | cytosol, plastid | 44.44 | 34.11 |
| CDY34708 | Canola | cytosol, plastid | 31.31 | 34.07 |
| CDY04162 | Canola | cytosol | 41.41 | 33.88 |
| CDX85544 | Canola | nucleus, plastid | 43.43 | 29.05 |
| CDX91981 | Canola | nucleus | 40.4 | 27.59 |
| CDX74269 | Canola | cytosol | 40.4 | 19.7 |
Protein Annotations
| EnsemblPlants:CDY63421 | EnsemblPlantsGene:GSBRNA2T00039280001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF2 | ProteinID:CDY63421 | ProteinID:CDY63421.1 |
| SEG:seg | UniParc:UPI0004EDE97D | UniProt:A0A078J8T9 | MapMan:20.1.5.1.3 | : | : |
Description
BnaCnng42090DBnaCnng42090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8T9]
Coordinates
chrLK034297:-:28923..29634
Molecular Weight (calculated)
10149.7 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.853
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MSLGGSSGGG KSSLGYLFGP DNETPKSVPP AAPKPTPPYG VDFTDGDNKS DQKPTLSENN NYPRAQGQNS GNFVTARPTT KVKSVPGGGS SLGYLFGNK
1: MSRGGSFGGG QSSLGYLFGS DNEIPKTPAP PVAPKPAPPY GVDSTEEDHE ADQKPKISNN NYQRVQGQNS GNFVTDRPTT KVKSVPGGGS SLGYLFGDK
Arabidopsis Description
SP1L5Protein SPIRAL1-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.